GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:LIGB
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | ligB (synonyms: yicF) | |
| Protein Name(s) | DNA ligase B
Polydeoxyribonucleotide synthase [NAD(+)] B | |
| External Links | ||
| UniProt | P25772 | |
| EMBL | L10328 U00096 AP009048 M84400 | |
| PIR | A65166 | |
| RefSeq | NP_418104.2 YP_491787.1 | |
| ProteinModelPortal | P25772 | |
| SMR | P25772 | |
| IntAct | P25772 | |
| STRING | 511145.b3647 | |
| PaxDb | P25772 | |
| PRIDE | P25772 | |
| DNASU | 948164 | |
| EnsemblBacteria | AAC76671 BAE77646 | |
| GeneID | 12933573 948164 | |
| KEGG | ecj:Y75_p3527 eco:b3647 | |
| PATRIC | 32122781 | |
| EchoBASE | EB1310 | |
| EcoGene | EG11334 | |
| eggNOG | COG0272 | |
| HOGENOM | HOG000267776 | |
| KO | K01972 | |
| OMA | WIQPKVD | |
| OrthoDB | EOG6TTVM9 | |
| PhylomeDB | P25772 | |
| BioCyc | EcoCyc:EG11334-MONOMER ECOL316407:JW3622-MONOMER MetaCyc:EG11334-MONOMER | |
| PRO | PR:P25772 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P25772 | |
| GO | GO:0005829 GO:0003911 GO:0006288 GO:0006266 GO:0006260 | |
| Gene3D | 2.40.50.140 | |
| HAMAP | MF_01587 | |
| InterPro | IPR018239 IPR020923 IPR013839 IPR013840 IPR012340 IPR004150 IPR010994 | |
| Pfam | PF01653 PF03120 | |
| SMART | SM00532 | |
| SUPFAM | SSF47781 SSF50249 | |
| PROSITE | PS01055 PS01056 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0006288 |
base-excision repair, DNA ligation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10534 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10534 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10534 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051103 |
DNA ligation involved in DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006266 |
DNA ligation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR004150 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006259 |
DNA metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003911 |
DNA ligase (NAD+) activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000079167 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006259 |
DNA metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000079167 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016874 |
ligase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Sriskanda, V & Shuman, S (2001) A second NAD(+)-dependent DNA ligase (LigB) in Escherichia coli. Nucleic Acids Res. 29 4930-4 PubMed GONUTS page
- ↑ Bodine, TJ et al. (2017) Escherichia coli DNA ligase B may mitigate damage from oxidative stress. PLoS ONE 12 e0180800 PubMed GONUTS page
