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ECOLI:IHFB

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) ihfB (synonyms: himD, hip)
Protein Name(s) Integration host factor subunit beta

IHF-beta

External Links
UniProt P0A6Y1
EMBL X04864
U00096
AP009048
PIR G64830
RefSeq NP_415432.1
YP_489184.1
PDB 1IHF
1OUZ
1OWF
1OWG
2HT0
2IIE
2IIF
PDBsum 1IHF
1OUZ
1OWF
1OWG
2HT0
2IIE
2IIF
ProteinModelPortal P0A6Y1
SMR P0A6Y1
DIP DIP-41099N
IntAct P0A6Y1
MINT MINT-365163
STRING 511145.b0912
PaxDb P0A6Y1
PRIDE P0A6Y1
EnsemblBacteria AAC73998
BAA35656
GeneID 12934067
945533
KEGG ecj:Y75_p0884
eco:b0912
PATRIC 32117037
EchoBASE EB0436
EcoGene EG10441
eggNOG COG0776
HOGENOM HOG000043828
InParanoid P0A6Y1
KO K05788
OMA PSRVGRN
OrthoDB EOG615VS6
PhylomeDB P0A6Y1
BioCyc EcoCyc:PD00348
ECOL316407:JW0895-MONOMER
EvolutionaryTrace P0A6Y1
PRO PR:P0A6Y1
Proteomes UP000000318
UP000000625
Genevestigator P0A6Y1
GO GO:0005694
GO:0005737
GO:0003677
GO:0000746
GO:0006310
GO:0006355
GO:0006417
GO:0006351
Gene3D 4.10.520.10
HAMAP MF_00381
InterPro IPR000119
IPR020816
IPR010992
IPR005685
Pfam PF00216
PRINTS PR01727
SMART SM00411
SUPFAM SSF47729
TIGRFAMs TIGR00988
PROSITE PS00045

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0005829

cytosol

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10440
EcoGene:EG10441
EcoGene:EG10466
EcoGene:EG10467
PANTHER:PTN002110664

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10466
EcoGene:EG10467
PANTHER:PTN002110658

F

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:8515442[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:8230206[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:7629095[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:8515442[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:8230206[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:8156991[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0032079

endodeoxyribonuclease activity

PMID:7499339[6]

ECO:0000314

F

Fig 3 & 5

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:7629095[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0032508

DNA duplex unwinding

PMID:19767439[7]

ECO:0000314

P

See Fig 6

complete

involved_in

GO:0006351

transcription, DNA-templated

PMID:7862094[8]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:18304323[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000119
InterPro:IPR005685
InterPro:IPR010992
InterPro:IPR020816

F

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005685

C

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005685

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005685

P

Seeded From UniProt

complete

involved_in

GO:0006417

regulation of translation

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001294

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001294

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001294

F

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001294

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0000746

conjugation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0184

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

involved_in

GO:0006417

regulation of translation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0810

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  2. 2.0 2.1 Mengeritsky, G et al. (1993) Genetic and biochemical analysis of the integration host factor of Escherichia coli. J. Mol. Biol. 231 646-57 PubMed GONUTS page
  3. 3.0 3.1 Granston, AE & Nash, HA (1993) Characterization of a set of integration host factor mutants deficient for DNA binding. J. Mol. Biol. 234 45-59 PubMed GONUTS page
  4. 4.0 4.1 Zulianello, L et al. (1995) Participation of the flank regions of the integration host factor protein in the specificity and stability of DNA binding. J. Biol. Chem. 270 17902-7 PubMed GONUTS page
  5. Zulianello, L et al. (1994) The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers. EMBO J. 13 1534-40 PubMed GONUTS page
  6. Nelson, WC et al. (1995) The traY gene product and integration host factor stimulate Escherichia coli DNA helicase I-catalyzed nicking at the F plasmid oriT. J. Biol. Chem. 270 28374-80 PubMed GONUTS page
  7. Sut, MV et al. (2009) Protein and DNA effectors control the TraI conjugative helicase of plasmid R1. J. Bacteriol. 191 6888-99 PubMed GONUTS page
  8. Presutti, DG & Hassan, HM (1995) Binding of integration host factor (IHF) to the Escherichia coli sodA gene and its role in the regulation of a sodA-lacZ fusion gene. Mol. Gen. Genet. 246 228-35 PubMed GONUTS page
  9. Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page