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ECOLI:IHFB
Contents
Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
Gene Name(s) | ihfB (synonyms: himD, hip) | |
Protein Name(s) | Integration host factor subunit beta
IHF-beta | |
External Links | ||
UniProt | P0A6Y1 | |
EMBL | X04864 U00096 AP009048 | |
PIR | G64830 | |
RefSeq | NP_415432.1 YP_489184.1 | |
PDB | 1IHF 1OUZ 1OWF 1OWG 2HT0 2IIE 2IIF | |
PDBsum | 1IHF 1OUZ 1OWF 1OWG 2HT0 2IIE 2IIF | |
ProteinModelPortal | P0A6Y1 | |
SMR | P0A6Y1 | |
DIP | DIP-41099N | |
IntAct | P0A6Y1 | |
MINT | MINT-365163 | |
STRING | 511145.b0912 | |
PaxDb | P0A6Y1 | |
PRIDE | P0A6Y1 | |
EnsemblBacteria | AAC73998 BAA35656 | |
GeneID | 12934067 945533 | |
KEGG | ecj:Y75_p0884 eco:b0912 | |
PATRIC | 32117037 | |
EchoBASE | EB0436 | |
EcoGene | EG10441 | |
eggNOG | COG0776 | |
HOGENOM | HOG000043828 | |
InParanoid | P0A6Y1 | |
KO | K05788 | |
OMA | PSRVGRN | |
OrthoDB | EOG615VS6 | |
PhylomeDB | P0A6Y1 | |
BioCyc | EcoCyc:PD00348 ECOL316407:JW0895-MONOMER | |
EvolutionaryTrace | P0A6Y1 | |
PRO | PR:P0A6Y1 | |
Proteomes | UP000000318 UP000000625 | |
Genevestigator | P0A6Y1 | |
GO | GO:0005694 GO:0005737 GO:0003677 GO:0000746 GO:0006310 GO:0006355 GO:0006417 GO:0006351 | |
Gene3D | 4.10.520.10 | |
HAMAP | MF_00381 | |
InterPro | IPR000119 IPR020816 IPR010992 IPR005685 | |
Pfam | PF00216 | |
PRINTS | PR01727 | |
SMART | SM00411 | |
SUPFAM | SSF47729 | |
TIGRFAMs | TIGR00988 | |
PROSITE | PS00045 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10440 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10466 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0032079 |
endodeoxyribonuclease activity |
ECO:0000314 |
F |
Fig 3 & 5 |
complete | |||||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0032508 |
DNA duplex unwinding |
ECO:0000314 |
P |
See Fig 6 |
complete | |||||
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000119 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005694 |
chromosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000001294 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000001294 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000001294 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000001294 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000746 |
conjugation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 Mengeritsky, G et al. (1993) Genetic and biochemical analysis of the integration host factor of Escherichia coli. J. Mol. Biol. 231 646-57 PubMed GONUTS page
- ↑ 3.0 3.1 Granston, AE & Nash, HA (1993) Characterization of a set of integration host factor mutants deficient for DNA binding. J. Mol. Biol. 234 45-59 PubMed GONUTS page
- ↑ 4.0 4.1 Zulianello, L et al. (1995) Participation of the flank regions of the integration host factor protein in the specificity and stability of DNA binding. J. Biol. Chem. 270 17902-7 PubMed GONUTS page
- ↑ Zulianello, L et al. (1994) The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers. EMBO J. 13 1534-40 PubMed GONUTS page
- ↑ Nelson, WC et al. (1995) The traY gene product and integration host factor stimulate Escherichia coli DNA helicase I-catalyzed nicking at the F plasmid oriT. J. Biol. Chem. 270 28374-80 PubMed GONUTS page
- ↑ Sut, MV et al. (2009) Protein and DNA effectors control the TraI conjugative helicase of plasmid R1. J. Bacteriol. 191 6888-99 PubMed GONUTS page
- ↑ Presutti, DG & Hassan, HM (1995) Binding of integration host factor (IHF) to the Escherichia coli sodA gene and its role in the regulation of a sodA-lacZ fusion gene. Mol. Gen. Genet. 246 228-35 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page