GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:HYFC
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | hyfC | |
| Protein Name(s) | Hydrogenase-4 component C | |
| External Links | ||
| UniProt | P77858 | |
| EMBL | M63654 U00096 AP009048 | |
| PIR | B65024 | |
| RefSeq | NP_416978.4 YP_490711.1 | |
| ProteinModelPortal | P77858 | |
| SMR | P77858 | |
| STRING | 511145.b2483 | |
| TCDB | 3.D.1.9.1 | |
| EnsemblBacteria | AAC75536 BAA16361 | |
| GeneID | 12930203 947492 | |
| KEGG | ecj:Y75_p2436 eco:b2483 | |
| PATRIC | 32120353 | |
| EchoBASE | EB3963 | |
| EcoGene | EG14211 | |
| eggNOG | COG0650 | |
| HOGENOM | HOG000228277 | |
| InParanoid | P77858 | |
| KO | K12138 | |
| OMA | RAKMHSR | |
| OrthoDB | EOG69PQ1G | |
| PhylomeDB | P77858 | |
| BioCyc | EcoCyc:MONOMER0-154 ECOL316407:JW2468-MONOMER | |
| PRO | PR:P77858 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P77858 | |
| GO | GO:0016021 GO:0005886 GO:0016491 GO:0006974 | |
| InterPro | IPR001694 IPR018086 | |
| PANTHER | PTHR11432 | |
| Pfam | PF00146 | |
| PROSITE | PS00668 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10477 |
C |
Seeded From UniProt |
complete | ||
| GO:0005887 |
integral to plasma membrane |
ECO:0000250 |
|
C |
Table 2: Sequence similarity inferred from a direct assay. |
complete | ||||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0997 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Andrews, SC et al. (1997) A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase system. Microbiology (Reading, Engl.) 143 ( Pt 11) 3633-47 PubMed GONUTS page
- ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
b
