GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:HOLC
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | holC | |
| Protein Name(s) | DNA polymerase III subunit chi | |
| External Links | ||
| UniProt | P28905 | |
| EMBL | L04574 Z14155 U14003 U00096 AP009048 X15130 | |
| PIR | A46739 | |
| RefSeq | NP_418680.1 YP_492397.1 | |
| PDB | 1EM8 3SXU | |
| PDBsum | 1EM8 3SXU | |
| ProteinModelPortal | P28905 | |
| SMR | P28905 | |
| DIP | DIP-9933N | |
| IntAct | P28905 | |
| MINT | MINT-1224072 | |
| STRING | 511145.b4259 | |
| EnsemblBacteria | AAC77216 BAE78256 | |
| GeneID | 12933731 948787 | |
| KEGG | ecj:Y75_p4142 eco:b4259 | |
| PATRIC | 32124089 | |
| EchoBASE | EB1385 | |
| EcoGene | EG11413 | |
| eggNOG | COG2927 | |
| HOGENOM | HOG000263567 | |
| InParanoid | P28905 | |
| KO | K02339 | |
| OMA | WQFEPSA | |
| OrthoDB | EOG68H887 | |
| BioCyc | EcoCyc:EG11413-MONOMER ECOL316407:JW4216-MONOMER | |
| EvolutionaryTrace | P28905 | |
| PRO | PR:P28905 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P28905 | |
| GO | GO:0043847 GO:0003677 GO:0003887 GO:0006260 GO:0032298 | |
| Gene3D | 3.40.50.10110 | |
| InterPro | IPR007459 | |
| Pfam | PF04364 | |
| SUPFAM | SSF102400 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0043847 |
DNA polymerase III, clamp loader chi/psi subcomplex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11413 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0032298 |
positive regulation of DNA-dependent DNA replication initiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11413 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0043847 |
DNA polymerase III, clamp loader chi/psi subcomplex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0043847 |
DNA polymerase III, clamp loader chi/psi subcomplex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0032298 |
positive regulation of DNA-dependent DNA replication initiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009314 |
response to radiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016779 |
nucleotidyltransferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Glover, BP & McHenry, CS (1998) The chi psi subunits of DNA polymerase III holoenzyme bind to single-stranded DNA-binding protein (SSB) and facilitate replication of an SSB-coated template. J. Biol. Chem. 273 23476-84 PubMed GONUTS page
- ↑ Witte, G et al. (2003) DNA polymerase III chi subunit ties single-stranded DNA binding protein to the bacterial replication machinery. Nucleic Acids Res. 31 4434-40 PubMed GONUTS page
- ↑ Yuzhakov, A et al. (1999) Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase. Cell 96 153-63 PubMed GONUTS page
- ↑ Sargentini, NJ et al. () Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Mutat. Res. 793-794 1-14 PubMed GONUTS page
