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ECOLI:DOSC
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | dosC (synonyms: yddV) | |
| Protein Name(s) | Diguanylate cyclase DosC
DGC Direct oxygen-sensing cyclase | |
| External Links | ||
| UniProt | P0AA89 | |
| EMBL | U00096 AP009048 | |
| PIR | E64902 | |
| RefSeq | NP_416007.3 YP_489755.1 | |
| ProteinModelPortal | P0AA89 | |
| SMR | P0AA89 | |
| STRING | 511145.b1490 | |
| PRIDE | P0AA89 | |
| DNASU | 945835 | |
| EnsemblBacteria | AAC74563 BAA15155 | |
| GeneID | 12933168 945835 | |
| KEGG | ecj:Y75_p1466 eco:b1490 | |
| PATRIC | 32118274 | |
| EchoBASE | EB3554 | |
| EcoGene | EG13793 | |
| eggNOG | COG2199 | |
| HOGENOM | HOG000006777 | |
| InParanoid | P0AA89 | |
| KO | K13069 | |
| OMA | DGHPDYE | |
| OrthoDB | EOG6G4VQG | |
| BioCyc | EcoCyc:G6784-MONOMER ECOL316407:JW5241-MONOMER MetaCyc:G6784-MONOMER | |
| UniPathway | UPA00599 | |
| PRO | PR:P0AA89 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AA89 | |
| GO | GO:0052621 GO:0005525 GO:0020037 GO:0005506 GO:0019825 GO:0015671 GO:0006355 GO:0006351 | |
| Gene3D | 1.10.490.10 | |
| InterPro | IPR000160 IPR009050 IPR012292 IPR029787 | |
| Pfam | PF00990 | |
| SMART | SM00267 | |
| SUPFAM | SSF46458 SSF55073 | |
| TIGRFAMs | TIGR00254 | |
| PROSITE | PS50887 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0052621 |
diguanylate cyclase activity |
ECO:0000314 |
F |
Table 2 |
complete | |||||
| GO:0042710 |
biofilm formation |
ECO:0000314 |
P |
Figure 1: Characterization of Biofilm Formation |
complete | |||||
|
involved_in |
GO:1902201 |
negative regulation of bacterial-type flagellum-dependent cell motility |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12880 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11257 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043709 |
cell adhesion involved in single-species biofilm formation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11643 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12880 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0070025 |
carbon monoxide binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0020037 |
heme binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0019825 |
oxygen binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0019825 |
oxygen binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0020037 |
heme binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Tuckerman, JR et al. (2009) An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control. Biochemistry 48 9764-74 PubMed GONUTS page
- ↑ Nascimento, HH et al. (2014) Phenotypic and genotypic characteristics associated with biofilm formation in clinical isolates of atypical enteropathogenic Escherichia coli (aEPEC) strains. BMC Microbiol. 14 184 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Pavlou, A et al. (2015) Probing the ligand recognition and discrimination environment of the globin-coupled oxygen sensor protein YddV by FTIR and time-resolved step-scan FTIR spectroscopy. Phys Chem Chem Phys 17 17007-15 PubMed GONUTS page
- ↑ Kitanishi, K et al. (2010) Important roles of Tyr43 at the putative heme distal side in the oxygen recognition and stability of the Fe(II)-O2 complex of YddV, a globin-coupled heme-based oxygen sensor diguanylate cyclase. Biochemistry 49 10381-93 PubMed GONUTS page
- ↑ Méndez-Ortiz, MM et al. (2006) Genome-wide transcriptional profile of Escherichia coli in response to high levels of the second messenger 3',5'-cyclic diguanylic acid. J. Biol. Chem. 281 8090-9 PubMed GONUTS page
