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ECOLI:DCUP

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) hemE (ECO:0000255 with HAMAP-Rule:MF_00218)
Protein Name(s) Uroporphyrinogen decarboxylase (ECO:0000255 with HAMAP-Rule:MF_00218)

UPD (ECO:0000255 with HAMAP-Rule:MF_00218) URO-D (ECO:0000255 with HAMAP-Rule:MF_00218)

External Links
UniProt P29680
EMBL D12624
U00006
U00096
AP009048
PIR H65206
RefSeq NP_418425.1
YP_491463.1
ProteinModelPortal P29680
SMR P29680
IntAct P29680
STRING 511145.b3997
PaxDb P29680
PRIDE P29680
EnsemblBacteria AAC76971
BAE77322
GeneID 12934224
948497
KEGG ecj:Y75_p3199
eco:b3997
PATRIC 32123517
EchoBASE EB1505
EcoGene EG11543
eggNOG COG0407
HOGENOM HOG000253896
InParanoid P29680
KO K01599
OMA FIDACFR
OrthoDB EOG6VXF6H
PhylomeDB P29680
BioCyc EcoCyc:UROGENDECARBOX-MONOMER
ECOL316407:JW3961-MONOMER
MetaCyc:UROGENDECARBOX-MONOMER
UniPathway UPA00251
PRO PR:P29680
Proteomes UP000000318
UP000000625
Genevestigator P29680
GO GO:0005737
GO:0004853
GO:0006783
GO:0006779
GO:0019353
GO:0006780
HAMAP MF_00218
InterPro IPR006361
IPR000257
Pfam PF01208
TIGRFAMs TIGR01464
PROSITE PS00906
PS00907

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0019353

protoporphyrinogen IX biosynthetic process from glutamate

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11543
PANTHER:PTN001843918

P

Seeded From UniProt

complete

involved_in

GO:0006783

heme biosynthetic process

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11543
MGI:MGI:98916
PANTHER:PTN000472929
SGD:S000002454

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11543
MGI:MGI:98916
PANTHER:PTN000472929
RGD:3946
UniProtKB:P06132
UniProtKB:P9WFE1

C

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11543
MGI:MGI:98916
PANTHER:PTN000472929
RGD:3946
SGD:S000002454
UniProtKB:P06132

F

Seeded From UniProt

complete

involved_in

GO:0006783

heme biosynthetic process

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006780

uroporphyrinogen III biosynthetic process

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006779

porphyrin-containing compound biosynthetic process

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0019353

protoporphyrinogen IX biosynthetic process from glutamate

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:18304323[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:15911532[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

PMID:7849561[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

PMID:1104578[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000257
InterPro:IPR006361

F

Seeded From UniProt

complete

involved_in

GO:0006779

porphyrin-containing compound biosynthetic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000257
InterPro:IPR006361

P

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:4.1.1.37

F

Seeded From UniProt

complete

enables

GO:0004853

uroporphyrinogen decarboxylase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000081074

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000081074

C

Seeded From UniProt

complete

involved_in

GO:0006779

porphyrin-containing compound biosynthetic process

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000081074

P

Seeded From UniProt

complete

enables

GO:0016831

carboxy-lyase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0210

F

Seeded From UniProt

complete

involved_in

GO:0006779

porphyrin-containing compound biosynthetic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0627

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0016829

lyase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0456

F

Seeded From UniProt

complete

involved_in

GO:0006782

protoporphyrinogen IX biosynthetic process

GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniPathway:UPA00251

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Săsărman, A et al. (1975) Uroporphyrin-accumulating mutant of Escherichia coli K-12. J. Bacteriol. 124 1205-12 PubMed GONUTS page
  3. Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
  4. Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
  5. Pido, S et al. (1994) Characterization of a hemA/hemE mutant of E. coli and regulation of hemE. Cell. Mol. Biol. (Noisy-le-grand) 40 945-56 PubMed GONUTS page