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ECOLI:DCDA
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | lysA | |
| Protein Name(s) | Diaminopimelate decarboxylase
DAP decarboxylase DAPDC | |
| External Links | ||
| UniProt | P00861 | |
| EMBL | J01614 U29581 U00096 AP009048 | |
| PIR | A01078 | |
| RefSeq | NP_417315.1 YP_491043.1 | |
| PDB | 1KNW 1KO0 | |
| PDBsum | 1KNW 1KO0 | |
| ProteinModelPortal | P00861 | |
| SMR | P00861 | |
| DIP | DIP-10132N | |
| IntAct | P00861 | |
| MINT | MINT-1292495 | |
| STRING | 511145.b2838 | |
| SWISS-2DPAGE | P00861 | |
| PaxDb | P00861 | |
| PRIDE | P00861 | |
| EnsemblBacteria | AAC75877 BAE76907 | |
| GeneID | 12932897 947313 | |
| KEGG | ecj:Y75_p2772 eco:b2838 | |
| PATRIC | 32121094 | |
| EchoBASE | EB0544 | |
| EcoGene | EG10549 | |
| eggNOG | COG0019 | |
| HOGENOM | HOG000045070 | |
| InParanoid | P00861 | |
| KO | K01586 | |
| OMA | VVGYICE | |
| OrthoDB | EOG6Z9B18 | |
| PhylomeDB | P00861 | |
| BioCyc | EcoCyc:DIAMINOPIMDECARB-MONOMER ECOL316407:JW2806-MONOMER MetaCyc:DIAMINOPIMDECARB-MONOMER | |
| UniPathway | UPA00034 | |
| EvolutionaryTrace | P00861 | |
| PRO | PR:P00861 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P00861 | |
| GO | GO:0008836 GO:0030170 GO:0009089 | |
| Gene3D | 2.40.37.10 3.20.20.10 | |
| HAMAP | MF_02120 | |
| InterPro | IPR009006 IPR002986 IPR022643 IPR022657 IPR022644 IPR022653 IPR000183 IPR029066 | |
| Pfam | PF02784 PF00278 | |
| PRINTS | PR01181 PR01179 | |
| SUPFAM | SSF50621 SSF51419 | |
| TIGRFAMs | TIGR01048 | |
| PROSITE | PS00878 PS00879 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10549 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10549 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030170 |
pyridoxal phosphate binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000183 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0030170 |
pyridoxal phosphate binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000160031 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008836 |
diaminopimelate decarboxylase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000160031 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000160031 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016829 |
lyase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008652 |
cellular amino acid biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016831 |
carboxy-lyase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009085 |
lysine biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniPathway:UPA00034 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Momany, C et al. (2002) Crystallization of diaminopimelate decarboxylase from Escherichia coli, a stereospecific D-amino-acid decarboxylase. Acta Crystallogr. D Biol. Crystallogr. 58 549-52 PubMed GONUTS page
- ↑ Bukhari, AI & Taylor, AL (1971) Genetic analysis of diaminopimelic acid- and lysine-requiring mutants of Escherichia coli. J. Bacteriol. 105 844-54 PubMed GONUTS page
- ↑ WHITE, PJ & KELLY, B (1965) PURIFICATION AND PROPERTIES OF DIAMINOPIMELATE DECARBOXYLASE FROM ESCHERICHIA COLI. Biochem. J. 96 75-84 PubMed GONUTS page
- ↑ Bourot, S et al. (2000) Glycine betaine-assisted protein folding in a lysA mutant of Escherichia coli. J. Biol. Chem. 275 1050-6 PubMed GONUTS page
