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ECOLI:DBHB
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | hupB (synonyms: hopD) | |
| Protein Name(s) | DNA-binding protein HU-beta
HU-1 NS1 | |
| External Links | ||
| UniProt | P0ACF4 | |
| EMBL | X16540 U82664 U00096 AP009048 X53241 D82943 | |
| PIR | S06880 | |
| RefSeq | NP_414974.1 YP_488732.1 | |
| PDB | 2O97 | |
| PDBsum | 2O97 | |
| ProteinModelPortal | P0ACF4 | |
| SMR | P0ACF4 | |
| DIP | DIP-31833N | |
| IntAct | P0ACF4 | |
| MINT | MINT-1236756 | |
| STRING | 511145.b0440 | |
| PaxDb | P0ACF4 | |
| PRIDE | P0ACF4 | |
| EnsemblBacteria | AAC73543 BAE76220 | |
| GeneID | 12931739 949095 | |
| KEGG | ecj:Y75_p0428 eco:b0440 | |
| PATRIC | 32116033 | |
| EchoBASE | EB0462 | |
| EcoGene | EG10467 | |
| eggNOG | COG0776 | |
| HOGENOM | HOG000043828 | |
| InParanoid | P0ACF4 | |
| KO | K03530 | |
| OMA | IKIAAKN | |
| OrthoDB | EOG615VS6 | |
| PhylomeDB | P0ACF4 | |
| BioCyc | EcoCyc:EG10467-MONOMER ECOL316407:JW0430-MONOMER | |
| EvolutionaryTrace | P0ACF4 | |
| PRO | PR:P0ACF4 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0ACF4 | |
| GO | GO:0003677 GO:0042802 GO:0030261 GO:0006351 | |
| Gene3D | 4.10.520.10 | |
| InterPro | IPR000119 IPR020816 IPR010992 | |
| Pfam | PF00216 | |
| PRINTS | PR01727 | |
| SMART | SM00411 | |
| SUPFAM | SSF47729 | |
| PROSITE | PS00045 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10440 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10466 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
| GO:0009432 |
cell division |
ECO:0000314 |
P |
please refer to methods and materials as well as results |
complete | |||||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
| GO:0009650 |
UV protection |
ECO:0000314 |
P |
please refer to page 3960 paragraph 4 |
complete | |||||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030261 |
chromosome condensation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Ramstein, J et al. (2003) Evidence of a thermal unfolding dimeric intermediate for the Escherichia coli histone-like HU proteins: thermodynamics and structure. J. Mol. Biol. 331 101-21 PubMed GONUTS page
- ↑ Aki, T & Adhya, S (1997) Repressor induced site-specific binding of HU for transcriptional regulation. EMBO J. 16 3666-74 PubMed GONUTS page
- ↑ Broyles, SS & Pettijohn, DE (1986) Interaction of the Escherichia coli HU protein with DNA. Evidence for formation of nucleosome-like structures with altered DNA helical pitch. J. Mol. Biol. 187 47-60 PubMed GONUTS page
- ↑ Rouvière-Yaniv, J & Kjeldgaard, NO (1979) Native Escherichia coli HU protein is a heterotypic dimer. FEBS Lett. 106 297-300 PubMed GONUTS page
- ↑ Painbeni, E et al. (1997) Alterations of the outer membrane composition in Escherichia coli lacking the histone-like protein HU. Proc. Natl. Acad. Sci. U.S.A. 94 6712-7 PubMed GONUTS page
- ↑ Delihas, N & Forst, S (2001) MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. J. Mol. Biol. 313 1-12 PubMed GONUTS page
- ↑ Lee, H et al. (2001) Expression of the seqA gene is negatively modulated by the HU protein in Escherichia coli. Mol. Gen. Genet. 264 931-5 PubMed GONUTS page
- ↑ Perez, N et al. (2000) A functional assay in Escherichia coli to detect non-assisted interaction between galactose repressor dimers. Nucleic Acids Res. 28 3600-4 PubMed GONUTS page
- ↑ 10.0 10.1 Boubrik, F & Rouviere-Yaniv, J (1995) Increased sensitivity to gamma irradiation in bacteria lacking protein HU. Proc. Natl. Acad. Sci. U.S.A. 92 3958-62 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
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