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ECOLI:CSPC
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | cspC (synonyms: msmB) | |
| Protein Name(s) | Cold shock-like protein CspC
CSP-C | |
| External Links | ||
| UniProt | P0A9Y6 | |
| EMBL | L28430 D28496 U00096 AP009048 | |
| PIR | S43618 | |
| RefSeq | NP_416337.1 YP_490084.1 | |
| ProteinModelPortal | P0A9Y6 | |
| SMR | P0A9Y6 | |
| DIP | DIP-36183N | |
| IntAct | P0A9Y6 | |
| MINT | MINT-1218847 | |
| STRING | 511145.b1823 | |
| SWISS-2DPAGE | P0A9Y6 | |
| PaxDb | P0A9Y6 | |
| PRIDE | P0A9Y6 | |
| EnsemblBacteria | AAC74893 BAA15634 | |
| GeneID | 12934542 946339 | |
| KEGG | ecj:Y75_p1798 eco:b1823 | |
| PATRIC | 32118965 | |
| EchoBASE | EB2120 | |
| EcoGene | EG12204 | |
| eggNOG | COG1278 | |
| HOGENOM | HOG000070674 | |
| InParanoid | P0A9Y6 | |
| KO | K03704 | |
| OMA | FEIQDGH | |
| OrthoDB | EOG618R0J | |
| PhylomeDB | P0A9Y6 | |
| BioCyc | EcoCyc:EG12204-MONOMER ECOL316407:JW1812-MONOMER | |
| PRO | PR:P0A9Y6 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A9Y6 | |
| GO | GO:0005737 GO:0016020 GO:0003723 GO:0001072 GO:0003697 GO:0060567 GO:0031564 GO:0006351 | |
| Gene3D | 2.40.50.140 | |
| InterPro | IPR019844 IPR012156 IPR011129 IPR002059 IPR012340 | |
| Pfam | PF00313 | |
| PIRSF | PIRSF002599 | |
| PRINTS | PR00050 | |
| SMART | SM00357 | |
| SUPFAM | SSF50249 | |
| PROSITE | PS00352 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003729 |
mRNA binding |
ECO:0000315 |
F |
Figure 3 shows that cspC mutant and cspC cspE double mutant have significantly lower transcript levels of rpoS than in the wild-type strain. The lack of rpoS transcripts in the mutants is assumed to be from the stabilization of the rpoS mRNA by CspC and CspE. |
complete | |||||
|
enables |
GO:0051087 |
chaperone binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
| GO:0051087 |
chaperone binding |
ECO:0000314 |
F |
Figure 5 of the paper shows that CspC levels decrease when GroEL is overexpressed. |
complete | |||||
|
involved_in |
GO:0060567 |
negative regulation of DNA-templated transcription, termination |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001072 |
transcription antitermination factor activity, RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0031564 |
transcription antitermination |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001072 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Shenhar, Y et al. (2012) Resistance to environmental stress requires the RNA chaperones CspC and CspE. Environ Microbiol Rep 4 532-9 PubMed GONUTS page
- ↑ 2.0 2.1 Lenz, G & Ron, EZ (2014) Novel interaction between the major bacterial heat shock chaperone (GroESL) and an RNA chaperone (CspC). J. Mol. Biol. 426 460-6 PubMed GONUTS page
- ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed GONUTS page
- ↑ 4.0 4.1 Bae, W et al. (2000) Escherichia coli CspA-family RNA chaperones are transcription antiterminators. Proc. Natl. Acad. Sci. U.S.A. 97 7784-9 PubMed GONUTS page
- ↑ 5.0 5.1 Phadtare, S & Inouye, M (1999) Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli. Mol. Microbiol. 33 1004-14 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
