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ECOLI:CSGD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | csgD | |
| Protein Name(s) | CsgBAC operon transcriptional regulatory protein | |
| External Links | ||
| UniProt | P52106 | |
| EMBL | X90754 U00096 AP009048 AF081826 | |
| PIR | S70786 | |
| RefSeq | NP_415558.1 YP_489307.1 | |
| ProteinModelPortal | P52106 | |
| SMR | P52106 | |
| DIP | DIP-9328N | |
| IntAct | P52106 | |
| MINT | MINT-1293972 | |
| STRING | 511145.b1040 | |
| PaxDb | P52106 | |
| PRIDE | P52106 | |
| EnsemblBacteria | AAC74124 BAA35830 | |
| GeneID | 12931070 949119 | |
| KEGG | ecj:Y75_p1009 eco:b1040 | |
| PATRIC | 32117313 | |
| EchoBASE | EB3186 | |
| EcoGene | EG13410 | |
| eggNOG | COG2771 | |
| HOGENOM | HOG000284130 | |
| KO | K04333 | |
| OMA | RKNNNIR | |
| OrthoDB | EOG69GZGV | |
| PhylomeDB | P52106 | |
| BioCyc | EcoCyc:PD01379 ECOL316407:JW1023-MONOMER | |
| PRO | PR:P52106 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P52106 | |
| GO | GO:0005886 GO:0000986 GO:0003700 GO:2000144 GO:1900190 GO:0006351 | |
| Gene3D | 1.10.10.10 | |
| InterPro | IPR016032 IPR000792 IPR011991 | |
| Pfam | PF00196 | |
| PRINTS | PR00038 | |
| SMART | SM00421 | |
| SUPFAM | SSF46894 | |
| PROSITE | PS00622 PS50043 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0042710 |
biofilm formation |
ECO:0000315 |
P |
Figure 1: curli fiber production due to increased penicillin production after plasmid with CsgD gene introduced. |
complete | |||||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_007779.1 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_007779.1 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_007779.1 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_007779.1 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:2000144 |
positive regulation of DNA-templated transcription, initiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1900190 |
regulation of single-species biofilm formation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000986 |
bacterial-type proximal promoter sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Gualdi, L et al. (2007) Biofilm formation-gene expression relay system in Escherichia coli: modulation of sigmaS-dependent gene expression by the CsgD regulatory protein via sigmaS protein stabilization. J. Bacteriol. 189 8034-43 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 Ogasawara, H et al. (2011) Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J. Bacteriol. 193 2587-97 PubMed GONUTS page
- ↑ Hammar, M et al. (1995) Expression of two csg operons is required for production of fibronectin- and congo red-binding curli polymers in Escherichia coli K-12. Mol. Microbiol. 18 661-70 PubMed GONUTS page
- ↑ 4.0 4.1 Brombacher, E et al. (2003) The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli. Microbiology (Reading, Engl.) 149 2847-57 PubMed GONUTS page
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