GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:BAMD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | bamD (ECO:0000255 with HAMAP-Rule:MF_00922) (synonyms: yfiO) | |
| Protein Name(s) | Outer membrane protein assembly factor BamD (ECO:0000255 with HAMAP-Rule:MF_00922) | |
| External Links | ||
| UniProt | P0AC02 | |
| EMBL | U00096 AP009048 Z70523 | |
| PIR | F65037 | |
| RefSeq | NP_417086.1 WP_000197686.1 | |
| PDB | 2YHC 3Q5M 3TGO | |
| PDBsum | 2YHC 3Q5M 3TGO | |
| ProteinModelPortal | P0AC02 | |
| SMR | P0AC02 | |
| BioGrid | 851422 | |
| DIP | DIP-51120N | |
| IntAct | P0AC02 | |
| MINT | MINT-8141303 | |
| STRING | 511145.b2595 | |
| TCDB | 1.B.33.1.3 | |
| PaxDb | P0AC02 | |
| EnsemblBacteria | AAC75644 BAA16480 | |
| GeneID | 947086 | |
| KEGG | eco:b2595 | |
| PATRIC | 32120593 | |
| EchoBASE | EB3974 | |
| EcoGene | EG14222 | |
| eggNOG | COG4105 | |
| HOGENOM | HOG000260923 | |
| InParanoid | P0AC02 | |
| KO | K05807 | |
| OMA | IHVADYY | |
| OrthoDB | EOG6WHNPP | |
| PhylomeDB | P0AC02 | |
| BioCyc | EcoCyc:G7352-MONOMER ECOL316407:JW2577-MONOMER | |
| PRO | PR:P0AC02 | |
| Proteomes | UP000000318 UP000000625 | |
| GO | GO:1990063 GO:0043165 GO:0051205 | |
| Gene3D | 1.25.40.10 | |
| HAMAP | MF_00922 | |
| InterPro | IPR017689 IPR011990 | |
| TIGRFAMs | TIGR03302 | |
| PROSITE | PS51257 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:1990063 |
Bam protein complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG14222 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0051205 |
protein insertion into membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG14222 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
EcoliWiki:nlpB |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:1990063 |
Bam protein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990063 |
Bam protein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990063 |
Bam protein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051205 |
protein insertion into membrane |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051205 |
protein insertion into membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051205 |
protein insertion into membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
EcoliWiki:nlpB |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051205 |
protein insertion into membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000052483 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000052483 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000052483 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Wu, T et al. (2005) Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Cell 121 235-45 PubMed GONUTS page
- ↑ Han, L et al. (2016) Structure of the BAM complex and its implications for biogenesis of outer-membrane proteins. Nat. Struct. Mol. Biol. 23 192-6 PubMed GONUTS page
- ↑ Bakelar, J et al. (2016) The structure of the β-barrel assembly machinery complex. Science 351 180-6 PubMed GONUTS page
- ↑ Stenberg, F et al. (2005) Protein complexes of the Escherichia coli cell envelope. J. Biol. Chem. 280 34409-19 PubMed GONUTS page
- ↑ 6.0 6.1 Malinverni, JC et al. (2006) YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli. Mol. Microbiol. 61 151-64 PubMed GONUTS page
- ↑ Hagan, CL et al. (2013) bam Lipoproteins Assemble BamA in vitro. Biochemistry 52 6108-13 PubMed GONUTS page
- ↑ 8.0 8.1 Hagan, CL et al. (2010) Reconstitution of outer membrane protein assembly from purified components. Science 328 890-2 PubMed GONUTS page
