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ECOLI:ARFB
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | arfB (synonyms: yaeJ) | |
| Protein Name(s) | Peptidyl-tRNA hydrolase ArfB
PTH Alternative ribosome-rescue factor B | |
| External Links | ||
| UniProt | P40711 | |
| EMBL | L38619 D49445 U70214 U00096 AP009048 U18345 | |
| PIR | G64743 | |
| RefSeq | NP_414733.1 YP_488494.1 | |
| PDB | 2RTX 4DH9 | |
| PDBsum | 2RTX 4DH9 | |
| ProteinModelPortal | P40711 | |
| SMR | P40711 | |
| IntAct | P40711 | |
| STRING | 511145.b0191 | |
| PaxDb | P40711 | |
| PRIDE | P40711 | |
| EnsemblBacteria | AAC73302 BAA77867 | |
| GeneID | 12934377 946046 | |
| KEGG | ecj:Y75_p0188 eco:b0191 | |
| PATRIC | 32115495 | |
| EchoBASE | EB2258 | |
| EcoGene | EG12354 | |
| eggNOG | COG1186 | |
| HOGENOM | HOG000244440 | |
| InParanoid | P40711 | |
| KO | K15034 | |
| OMA | RITQEGV | |
| OrthoDB | EOG628F97 | |
| PhylomeDB | P40711 | |
| BioCyc | EcoCyc:EG12354-MONOMER ECOL316407:JW0187-MONOMER MetaCyc:EG12354-MONOMER RETL1328306-WGS:GSTH-38-MONOMER | |
| PRO | PR:P40711 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P40711 | |
| GO | GO:0005737 GO:0004045 GO:0043022 GO:0003747 GO:0072344 | |
| InterPro | IPR000352 | |
| Pfam | PF00472 | |
| PROSITE | PS00745 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0072344 |
rescue of stalled ribosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12354 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043022 |
ribosome binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12354 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12354 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0072344 |
rescue of stalled ribosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0072344 |
rescue of stalled ribosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043022 |
ribosome binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003747 |
translation release factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006415 |
translational termination |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Chadani, Y et al. (2011) Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways. Mol. Microbiol. 80 772-85 PubMed GONUTS page
- ↑ 3.0 3.1 Handa, Y et al. (2011) YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes. Nucleic Acids Res. 39 1739-48 PubMed GONUTS page
