DANRE:OPSD

Species (Taxon ID)	Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s)	rho (synonyms: zfo2)
Protein Name(s)	Rhodopsin
External Links
UniProt	P35359
EMBL	L11014 AF105152 AF109368 AF331797 BC063938
PIR	A48191
RefSeq	NP_571159.1
UniGene	Dr.354
ProteinModelPortal	P35359
SMR	P35359
STRING	7955.ENSDARP00000011562
Ensembl	ENSDART00000027000
GeneID	30295
KEGG	dre:30295
CTD	6010
ZFIN	ZDB-GENE-990415-271
eggNOG	NOG311294
GeneTree	ENSGT00760000118977
HOGENOM	HOG000253932
HOVERGEN	HBG107442
InParanoid	P35359
KO	K04250
OMA	CGKNPFE
OrthoDB	EOG72NRQJ
TreeFam	TF324998
NextBio	20806737
PRO	PR:P35359
Proteomes	UP000000437
Bgee	P35359
GO	GO:0016021 GO:0004930 GO:0009881 GO:0016918 GO:0018298 GO:0016056 GO:0007601
Gene3D	4.10.840.10
InterPro	IPR000276 IPR017452 IPR001760 IPR027430 IPR000732 IPR019477
Pfam	PF00001 PF10413
PRINTS	PR00237 PR00238 PR00579
PROSITE	PS00237 PS50262 PS00238

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0016021	integral component of membrane	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P02699	C	Seeded From UniProt	complete
enables	GO:0005502	11-cis retinal binding	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P02699	F	Seeded From UniProt	complete
involved_in	GO:0016056	rhodopsin mediated signaling pathway	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P02699	P	Seeded From UniProt	complete
part_of	GO:0097381	photoreceptor disc membrane	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P08100	C	Seeded From UniProt	complete
enables	GO:0016918	retinal binding	PMID:10349978^[1]	ECO:0000303	author statement without traceable support used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0016056	rhodopsin mediated signaling pathway	PMID:10349976^[2]	ECO:0000303	author statement without traceable support used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0009881	photoreceptor activity	PMID:10349976^[2]	ECO:0000303	author statement without traceable support used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0016918	retinal binding	PMID:27811293^[3]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0016038	absorption of visible light	PMID:21416149^[4]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	PMID:26098991^[5]	ECO:0000250	sequence similarity evidence used in manual assertion	RefSeq:NM_001014890	C	Seeded From UniProt	complete
enables	GO:0009881	photoreceptor activity	PMID:27811293^[3]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0009583	detection of light stimulus	PMID:26098991^[5]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	PMID:21416149^[4]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
part_of	GO:0001750	photoreceptor outer segment	PMID:18492793^[6]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0071482	cellular response to light stimulus	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 MGI:MGI:97914 PANTHER:PTN000662115 UniProtKB:D0E2W5 UniProtKB:F1NEY8	P	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 FB:FBgn0003249 FB:FBgn0003250 FB:FBgn0014019 FB:FBgn0019940 MGI:MGI:1353425 PANTHER:PTN000662115 RGD:621701 UniProtKB:D0E2W5 UniProtKB:F1NEY2 UniProtKB:F1NEY8 UniProtKB:P02699 UniProtKB:Q9UHM6	F	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 FB:FBgn0014019 FB:FBgn0019940 MGI:MGI:1353425 MGI:MGI:97914 PANTHER:PTN000662115 RGD:621701 UniProtKB:F1RAF0 UniProtKB:Q9UHM6 ZFIN:ZDB-GENE-040724-51 ZFIN:ZDB-GENE-061201-30 ZFIN:ZDB-GENE-081105-91	P	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000662115 UniProtKB:P08100 ZFIN:ZDB-GENE-070111-2 ZFIN:ZDB-GENE-080415-3 ZFIN:ZDB-GENE-110622-1	P	Seeded From UniProt	complete
part_of	GO:0005887	integral component of plasma membrane	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:1929473 PANTHER:PTN000662115 UniProtKB:P02699	C	Seeded From UniProt	complete
part_of	GO:0001750	photoreceptor outer segment	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:1097692 MGI:MGI:97914 MGI:MGI:99438 PANTHER:PTN000662150 RGD:3573 RGD:620978 RGD:621033 UniProtKB:F1P3Y2 UniProtKB:P08100 UniProtKB:P22328 UniProtKB:P22329 ZFIN:ZDB-GENE-990604-42	C	Seeded From UniProt	complete
enables	GO:0004930	G protein-coupled receptor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276	F	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276 InterPro:IPR000732 InterPro:IPR001760	P	Seeded From UniProt	complete
involved_in	GO:0007601	visual perception	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001760	P	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000732	P	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276 InterPro:IPR000732 InterPro:IPR001760 InterPro:IPR017452	C	Seeded From UniProt	complete
involved_in	GO:0018298	protein-chromophore linkage	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0157	P	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0681	P	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0812	C	Seeded From UniProt	complete
involved_in	GO:0007165	signal transduction	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0807	P	Seeded From UniProt	complete
involved_in	GO:0007601	visual perception	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0844	P	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0297	P	Seeded From UniProt	complete
part_of	GO:0016020	membrane	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0472 UniProtKB-SubCell:SL-0162	C	Seeded From UniProt	complete
enables	GO:0009881	photoreceptor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0600	F	Seeded From UniProt	complete
involved_in	GO:0050896	response to stimulus	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0716	P	Seeded From UniProt	complete
enables	GO:0004930	G protein-coupled receptor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0297	F	Seeded From UniProt	complete
part_of	GO:0042995	cell projection	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0966	C	Seeded From UniProt	complete
part_of	GO:0001750	photoreceptor outer segment	GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-SubCell:SL-0458	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ Schmitt, EA et al. () Erratum: Temporal and spatial patterns of opsin gene expression in the zebrafish (Danio rerio): corrections with additions. Vis. Neurosci. 16 601-5 PubMed GONUTS page
↑ ^2.0 ^2.1 Vihtelic, TS et al. () Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins. Vis. Neurosci. 16 571-85 PubMed GONUTS page
↑ ^3.0 ^3.1 Morrow, JM et al. (2017) A second visual rhodopsin gene, rh1-2, is expressed in zebrafish photoreceptors and found in other ray-finned fishes. J. Exp. Biol. 220 294-303 PubMed GONUTS page
↑ ^4.0 ^4.1 Tarttelin, EE et al. (2011) Adaptation of pineal expressed teleost exo-rod opsin to non-image forming photoreception through enhanced Meta II decay. Cell. Mol. Life Sci. 68 3713-23 PubMed GONUTS page
↑ ^5.0 ^5.1 Morrow, JM & Chang, BS (2015) Comparative Mutagenesis Studies of Retinal Release in Light-Activated Zebrafish Rhodopsin Using Fluorescence Spectroscopy. Biochemistry 54 4507-18 PubMed GONUTS page
↑ Krock, BL & Perkins, BD (2008) The intraflagellar transport protein IFT57 is required for cilia maintenance and regulates IFT-particle-kinesin-II dissociation in vertebrate photoreceptors. J. Cell. Sci. 121 1907-15 PubMed GONUTS page
↑ ^7.0 ^7.1 ^7.2 ^7.3 ^7.4 ^7.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:10349978-1] Schmitt, EA et al. () Erratum: Temporal and spatial patterns of opsin gene expression in the zebrafish (Danio rerio): corrections with additions. Vis. Neurosci. 16 601-5 PubMed GONUTS page

[PMID:10349976-2] 2.0 ^2.1 Vihtelic, TS et al. () Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins. Vis. Neurosci. 16 571-85 PubMed GONUTS page

[PMID:27811293-3] 3.0 ^3.1 Morrow, JM et al. (2017) A second visual rhodopsin gene, rh1-2, is expressed in zebrafish photoreceptors and found in other ray-finned fishes. J. Exp. Biol. 220 294-303 PubMed GONUTS page

[PMID:21416149-4] 4.0 ^4.1 Tarttelin, EE et al. (2011) Adaptation of pineal expressed teleost exo-rod opsin to non-image forming photoreception through enhanced Meta II decay. Cell. Mol. Life Sci. 68 3713-23 PubMed GONUTS page

[PMID:26098991-5] 5.0 ^5.1 Morrow, JM & Chang, BS (2015) Comparative Mutagenesis Studies of Retinal Release in Light-Activated Zebrafish Rhodopsin Using Fluorescence Spectroscopy. Biochemistry 54 4507-18 PubMed GONUTS page

[PMID:18492793-6] Krock, BL & Perkins, BD (2008) The intraflagellar transport protein IFT57 is required for cilia maintenance and regulates IFT-particle-kinesin-II dissociation in vertebrate photoreceptors. J. Cell. Sci. 121 1907-15 PubMed GONUTS page

[PMID:21873635-7] 7.0 ^7.1 ^7.2 ^7.3 ^7.4 ^7.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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DANRE:OPSD

Contents

Annotations

Notes

References

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