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DANRE:B3DKQ3

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Species (Taxon ID) Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s) No Information Provided.
Protein Name(s) Col2a1a protein (ECO:0000313 with EMBL:AAI63934.1)
External Links
UniProt B3DKQ3
EMBL BC163934
UniGene Dr.75057
ZFIN ZDB-GENE-980526-192
eggNOG NOG12793
HOGENOM HOG000085654
HOVERGEN HBG004933
GO GO:0005581
GO:0005201
InterPro IPR008160
IPR000885
IPR001007
Pfam PF01410
PF01391
PF00093
ProDom PD002078
SMART SM00038
SM00214
PROSITE PS51461
PS01208
PS50184

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0048706

embryonic skeletal system development

PMID:28835471[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-180503-9

P

Seeded From UniProt

complete

involved_in

GO:0048706

embryonic skeletal system development

PMID:28835471[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-180503-13

P

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

PMID:17543297[2]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070919-4
ZFIN:ZDB-MRPHLNO-070919-6

P

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

PMID:17543297[2]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070818-2
ZFIN:ZDB-MRPHLNO-070919-6

P

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

PMID:17543297[2]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070818-1
ZFIN:ZDB-MRPHLNO-070919-6

P

Seeded From UniProt

complete

involved_in

GO:0007411

axon guidance

PMID:27339293[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-980202-988

P

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

PMID:8589433[4]

ECO:0000250

sequence similarity evidence used in manual assertion

protein_id:AAA58428

C

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88445
MGI:MGI:88446
MGI:MGI:88452
MGI:MGI:88453
MGI:MGI:88457
MGI:MGI:88467
PANTHER:PTN002513067

C

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
PANTHER:PTN002771202

P

Seeded From UniProt

complete

involved_in

GO:0030199

collagen fibril organization

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88458
PANTHER:PTN002771202
UniProtKB:P02458
UniProtKB:P05997

P

Seeded From UniProt

complete

involved_in

GO:0030198

extracellular matrix organization

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1095415
MGI:MGI:2152695
MGI:MGI:2672118
MGI:MGI:88451
PANTHER:PTN002513067
WB:WBGene00001263
ZFIN:ZDB-GENE-030131-2281

P

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88468
PANTHER:PTN002513067
RGD:61817
RGD:70936
RGD:727898
UniProtKB:P02452
UniProtKB:P02458
UniProtKB:P02461
UniProtKB:P08123
UniProtKB:Q9BXS0

C

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88458
PANTHER:PTN002771202

C

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104687
MGI:MGI:2672118
MGI:MGI:88457
MGI:MGI:88467
PANTHER:PTN002513067
UniProtKB:P02461
UniProtKB:P02462
UniProtKB:P53420

F

Seeded From UniProt

complete

involved_in

GO:0001501

skeletal system development

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88458
PANTHER:PTN002771202
UniProtKB:P02458

P

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000885

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Henke, K et al. (2017) Genetic Screen for Postembryonic Development in the Zebrafish (): Dominant Mutations Affecting Adult Form. Genetics 207 609-623 PubMed GONUTS page
  2. 2.0 2.1 2.2 Gansner, JM et al. (2007) Essential role of lysyl oxidases in notochord development. Dev. Biol. 307 202-13 PubMed GONUTS page
  3. Warga, RM et al. (2016) Progressive loss of RacGAP1/ogre activity has sequential effects on cytokinesis and zebrafish development. Dev. Biol. 418 307-22 PubMed GONUTS page
  4. Yan, YL et al. (1995) Expression of a type II collagen gene in the zebrafish embryonic axis. Dev. Dyn. 203 363-76 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page