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Category talk:CACAO Fall 2016
GO Term (GitHub) Requests
Ask us for help if this is your first Term Request. You'll need to read through this NTR Guide as well. Making an entry here only reminds us you have made a term request on the proper page, this table is not where the GO Consortium will address your requests. You must do that on GitHub.
If you do not yet have a GitHub ticket for your request, you should not edit this table.
| User | Type | GO ID | term name | GitHub Link | GONUTS Link | Status | Notes |
|---|---|---|---|---|---|---|---|
|
Fixed Definition |
GO:0031297 |
replication fork processing |
https://github.com/geneontology/go-ontology/issues/12682#issuecomment-250118194 |
accepted by GOC |
When I look on QuickGO and AmiGO, the definition for the termGO:0031297 (replication fork processing) is "The process in which a DNA replication fork that has stalled is to a functional state and replication is restarted..." I believe that there is an error in this definition and it should read "The process in which a DNA replication fork that has stalled is RESTORED to a functional state and replication is restarted..." | ||
|
New term request |
accepted by GOC |
Name: Regulation of Golgi lumen acidification Definition: Any process that modulates the frequency, rate, or extent of a process that reduces the internal pH of the Golgi lumen. Aspect: cellular process Relationships: Parent term -GO:0032847 regulation of cellular pH reductions; sibling term toGO:1901546 regulation of synaptic vesicle lumen acidification Reference: PMID:23447592[1], particularly figure 5 | |||||
|
[[User:yourusername]] |
Please select one |
Link to the GitHub ticket where the request was made |
Link to the annotation. Format as [[Special:Cacao/annotation/10937]]: Special:Cacao/annotation/10937 |
Please select one |
Provide your suggested GO term name, etc. | ||
|
New term request |
accepted by GOC |
Name: negative regulation of Golgi lumen acidification Definition: Any process that stops, prevents or reduces the frequency, rate or extent of Golgi lumen acidification. | |||||
|
New term request |
accepted by GOC |
Name: positive regulation of Golgi lumen acidification Definition: Any process that activates or increases the frequency, rate or extent of Golgi lumen acidification. | |||||
|
New term request |
GO:0061795 |
accepted by GOC |
Name: Golgi lumen acidification Definition: Any process that reduces the pH of the Golgi lumen, measured by the concentration of the hydrogen ion. | ||||
|
EClary |
Fixed Definition |
GO:0043111 |
replication fork arrest |
accepted by GOC |
I was unsure thatGO:0043111 (replication fork arrest), always related to its parent termGO:0045005 (DNA-dependent DNA replication maintenance of fidelity), so I proposed that the relationship between these two terms be modified. This resulted in the modification of the definition ofGO:0043111 (replication fork arrest). The definition was changed to "Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication by impeding the progress of the DNA replication fork. Replication fork arrest is one of the 'quality control' processes ensuring that DNA-dependent DNA replication occurs correctly. DNA replication fork arrest during DNA-dependent DNA replication is not known to occur outside of cases where a replication error needs to be prevented or corrected." | ||
|
EClary |
Fixed Definition |
GO:0008753 |
NADPH dehydrogenase (quinone) activity |
requested |
|||
|
EClary |
Fixed Definition |
GO:0003959 |
NADPH dehydrogenase activity |
requested |
|||
|
New term request |
GO:1905703 |
accepted by GOC |
Neg. Reg. Inhibitory synapse assembly http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:1904862#term=info ID:GO:1905702 Label: regulation of inhibitory synapse assembly ID:GO:1905703 Label: negative regulation of inhibitory synapse assembly ID:GO:1905704 Label: positive regulation of inhibitory synapse assembly | ||||
|
New term request |
GO:1905704 |
accepted by GOC |
http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:1904862#term=info Pos. Reg.GO:1905704 Label: positive regulation of inhibitory synapse assembly
| ||||
|
New term request |
GO:1905702 |
accepted by GOC |
Neg. Reg. Inhibitory synapse assembly http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:1904862#term=info ID:GO:1905702 Label: regulation of inhibitory synapse assembly | ||||
|
New term request |
regulation of inhibitory synapse assembly |
accepted by GOC |
NTR: Regulation of synapse disassembly ... this is still being resolved. | ||||
- ↑ Condon, KH et al. (2013) The Angelman syndrome protein Ube3a/E6AP is required for Golgi acidification and surface protein sialylation. J. Neurosci. 33 3799-814 PubMed GONUTS page
