CLOTH:A3DBH0

Species (Taxon ID)	Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridiumthermocellum). (203119)
Gene Name(s)	No Information Provided.
Protein Name(s)	RNA polymerase sigma-I factor (ECO:0000313 with EMBL:ABN51299.1)
External Links
UniProt	A3DBH0
EMBL	CP000568
RefSeq	YP_001036492.1
DIP	DIP-59449N
STRING	203119.Cthe_0058
EnsemblBacteria	ABN51299
GeneID	4808753
KEGG	cth:Cthe_0058
PATRIC	19513723
eggNOG	COG1191
HOGENOM	HOG000094544
KO	K03093
OMA	KINTHNR
OrthoDB	EOG6GTZH0
BioCyc	CTHE203119:GIW8-58-MONOMER
Proteomes	UP000002145
GO	GO:0003677 GO:0003700 GO:0016987 GO:0006352
InterPro	IPR014244 IPR013325
PIRSF	PIRSF038953
SUPFAM	SSF88946
TIGRFAMs	TIGR02895

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0016987	sigma factor activity	PMID:20937888	ECO:0000314			F		Fig. 4. In vitro runoff transcription assay with purified C. thermocellum RNA polymerase and linear DNA containing the putative σI1 promoter sequence resulted in transcription from the sigI1 and celS promoters.	complete CACAO 2055
enables	GO:0016987	sigma factor activity	PMID:20937888	ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013325	F		Seeded From UniProt	complete
involved_in	GO:0006352	DNA-templated transcription, initiation	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013325	P		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013325	P		Seeded From UniProt	complete
involved_in	GO:0001123	transcription initiation from bacterial-type RNA polymerase promoter	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000336380	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000336380	C		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000336380	F		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000336380	F		Seeded From UniProt	complete
involved_in	GO:0010468	regulation of gene expression	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000336380	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0731	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0731	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
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References

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