GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CHLRE:IF172
Contents
| Species (Taxon ID) | Chlamydomonas reinhardtii (Chlamydomonas smithii). (3055) | |
| Gene Name(s) | IFT172 (synonyms: FLA11) | |
| Protein Name(s) | Intraflagellar transport protein 172 | |
| External Links | ||
| UniProt | Q5DM57 | |
| EMBL | AY615520 DS496120 | |
| RefSeq | XP_001691740.1 | |
| UniGene | Cre.13782 | |
| ProteinModelPortal | Q5DM57 | |
| STRING | 3055.JGI183240 | |
| EnsemblPlants | EDP04848 | |
| GeneID | 5717250 | |
| KEGG | cre:CHLREDRAFT_183240 | |
| eggNOG | COG2319 | |
| InParanoid | Q5DM57 | |
| OMA | KLRLHLY | |
| Proteomes | UP000006906 | |
| GO | GO:0005930 GO:0036064 GO:0030992 GO:0031514 GO:0042384 GO:0007275 | |
| Gene3D | 2.130.10.10 | |
| InterPro | IPR000048 IPR011044 IPR015943 IPR001680 IPR017986 | |
| Pfam | PF00400 | |
| SMART | SM00320 | |
| SUPFAM | SSF50969 SSF50978 | |
| PROSITE | PS50294 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0042073 |
intraflagellar transport |
ECO:0000314 |
P |
Immunomicroscopy shows migration of protein in anterograde fashion and arrest at tip figure 2 |
complete | |||||
| GO:0045504 |
dynein heavy chain binding |
ECO:0000021 |
|
F |
Figure 4 shows co-IP of cDynein1 HC with IFT172. |
complete | ||||
| GO:0030992 |
intraflagellar transport particle B |
ECO:0000021 |
C |
Antibody to IFT172 associates with complex b, fig 3 |
Missing: with/from | |||||
| GO:0005515 |
protein binding |
PMID 17895364 |
ECO:0000021 |
|
F |
Figure 6 D shows protein brought down by antiIFT172 beads |
Missing: reference | |||
|
part_of |
GO:0030992 |
intraciliary transport particle B |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0036064 |
ciliary basal body |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2146906 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0030992 |
intraciliary transport particle B |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682064 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005930 |
axoneme |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2146906 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0036064 |
ciliary basal body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031514 |
motile cilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0042995 |
cell projection |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005929 |
cilium |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Pedersen, LB et al. (2006) Dissecting the molecular mechanisms of intraflagellar transport in chlamydomonas. Curr. Biol. 16 450-9 PubMed GONUTS page
- ↑ Rompolas, P et al. (2007) Chlamydomonas FAP133 is a dynein intermediate chain associated with the retrograde intraflagellar transport motor. J. Cell. Sci. 120 3653-65 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 4.0 4.1 Hou, Y et al. (2007) Functional analysis of an individual IFT protein: IFT46 is required for transport of outer dynein arms into flagella. J. Cell Biol. 176 653-65 PubMed GONUTS page
