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CHICK:LUM
Contents
| Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
| Gene Name(s) | LUM (synonyms: LDC) | |
| Protein Name(s) | Lumican
Keratan sulfate proteoglycan lumican KSPG lumican | |
| External Links | ||
| UniProt | P51890 | |
| EMBL | M80584 | |
| PIR | A41748 | |
| RefSeq | NP_001263286.1 | |
| UniGene | Gga.4078 | |
| ProteinModelPortal | P51890 | |
| STRING | 9031.ENSGALP00000018370 | |
| PaxDb | P51890 | |
| PRIDE | P51890 | |
| Ensembl | ENSGALT00000018392 | |
| GeneID | 417891 | |
| KEGG | gga:417891 | |
| CTD | 4060 | |
| eggNOG | COG4886 | |
| GeneTree | ENSGT00760000118969 | |
| HOGENOM | HOG000234447 | |
| HOVERGEN | HBG108061 | |
| InParanoid | P51890 | |
| KO | K08122 | |
| OMA | KKLHINY | |
| OrthoDB | EOG75F4DF | |
| PhylomeDB | P51890 | |
| TreeFam | TF334562 | |
| Reactome | REACT_197560 REACT_198183 REACT_262058 REACT_269430 REACT_269766 | |
| NextBio | 20821127 | |
| PRO | PR:P51890 | |
| Proteomes | UP000000539 | |
| GO | GO:0005615 GO:0070062 GO:0005583 GO:0030199 GO:0045944 GO:0007601 | |
| InterPro | IPR001611 IPR003591 IPR000372 IPR027219 | |
| PANTHER | PTHR24371:SF54 | |
| Pfam | PF00560 PF13855 PF01462 | |
| SMART | SM00369 SM00013 | |
| PROSITE | PS51450 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0005518 |
collagen binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000689695 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005583 |
fibrillar collagen trimer |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51884 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005518 |
collagen binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51884 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51885 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0032914 |
positive regulation of transforming growth factor beta1 production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51885 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51885 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0007601 |
visual perception |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030199 |
collagen fibril organization |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page