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CHICK:LUM

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) LUM (synonyms: LDC)
Protein Name(s) Lumican

Keratan sulfate proteoglycan lumican KSPG lumican

External Links
UniProt P51890
EMBL M80584
PIR A41748
RefSeq NP_001263286.1
UniGene Gga.4078
ProteinModelPortal P51890
STRING 9031.ENSGALP00000018370
PaxDb P51890
PRIDE P51890
Ensembl ENSGALT00000018392
GeneID 417891
KEGG gga:417891
CTD 4060
eggNOG COG4886
GeneTree ENSGT00760000118969
HOGENOM HOG000234447
HOVERGEN HBG108061
InParanoid P51890
KO K08122
OMA KKLHINY
OrthoDB EOG75F4DF
PhylomeDB P51890
TreeFam TF334562
Reactome REACT_197560
REACT_198183
REACT_262058
REACT_269430
REACT_269766
NextBio 20821127
PRO PR:P51890
Proteomes UP000000539
GO GO:0005615
GO:0070062
GO:0005583
GO:0030199
GO:0045944
GO:0007601
InterPro IPR001611
IPR003591
IPR000372
IPR027219
PANTHER PTHR24371:SF54
Pfam PF00560
PF13855
PF01462
SMART SM00369
SM00013
PROSITE PS51450

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0005518

collagen binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000689695
UniProtKB:P51884

F

Seeded From UniProt

complete

part_of

GO:0005583

fibrillar collagen trimer

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P51884
ensembl:ENSP00000266718

C

Seeded From UniProt

complete

enables

GO:0005518

collagen binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P51884
ensembl:ENSP00000266718

F

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P51885
ensembl:ENSMUSP00000040877

P

Seeded From UniProt

complete

involved_in

GO:0032914

positive regulation of transforming growth factor beta1 production

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P51885
ensembl:ENSMUSP00000040877

P

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P51885
ensembl:ENSMUSP00000040877

C

Seeded From UniProt

complete

involved_in

GO:0007601

visual perception

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR027219

P

Seeded From UniProt

complete

involved_in

GO:0030199

collagen fibril organization

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR027219

P

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR027219

C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page