GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:CO6A1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) COL6A1
Protein Name(s) Collagen alpha-1(VI) chain
External Links
UniProt P20785
EMBL X64458
X57998
J04598
X57987
PIR A32856
RefSeq NP_990438.1
UniGene Gga.3110
ProteinModelPortal P20785
STRING 9031.ENSGALP00000038878
PaxDb P20785
PRIDE P20785
GeneID 396000
KEGG gga:396000
CTD 1291
eggNOG NOG256042
HOGENOM HOG000111863
HOVERGEN HBG095954
InParanoid P20785
KO K06238
PhylomeDB P20785
NextBio 20816063
PRO PR:P20785
Proteomes UP000000539
GO GO:0005581
GO:0005578
GO:0007155
Gene3D 3.40.50.410
InterPro IPR008160
IPR002035
Pfam PF01391
PF00092
SMART SM00327
SUPFAM SSF53300
PROSITE PS50234

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109613
MGI:MGI:1341272
MGI:MGI:1921449
MGI:MGI:2179729
MGI:MGI:2684334
MGI:MGI:88462
PANTHER:PTN001523162
UniProtKB:O43405
ZFIN:ZDB-GENE-030131-9889

C

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:106591
MGI:MGI:109613
MGI:MGI:1278313
MGI:MGI:1328350
MGI:MGI:1921449
MGI:MGI:2179729
MGI:MGI:88459
MGI:MGI:88460
MGI:MGI:88461
PANTHER:PTN001523162
UniProtKB:P12111

C

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2684334
MGI:MGI:88461
MGI:MGI:96924
PANTHER:PTN001523162
RGD:3055
RGD:67380
UniProtKB:P11226
UniProtKB:Q5GFL6

C

Seeded From UniProt

complete

involved_in

GO:0003429

growth plate cartilage chondrocyte morphogenesis

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:106591
PANTHER:PTN001523162

P

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0176

C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964

C

Seeded From UniProt

complete

involved_in

GO:0007155

cell adhesion

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0130

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page