GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CAUCN:B8H389
Contents
| Species (Taxon ID) | Caulobacter crescentus (strain NA1000 / CB15N). (565050) | |
| Gene Name(s) | xylR (ECO:0000313 with EMBL:ACL96626.1) | |
| Protein Name(s) | Transcriptional regulator xylR (ECO:0000313 with EMBL:ACL96626.1) | |
| External Links | ||
| UniProt | B8H389 | |
| EMBL | CP001340 | |
| RefSeq | YP_002518534.1 | |
| ProteinModelPortal | B8H389 | |
| SMR | B8H389 | |
| STRING | 190650.CC_3065 | |
| EnsemblBacteria | ACL96626 | |
| GeneID | 7330999 | |
| KEGG | ccs:CCNA_03161 | |
| PATRIC | 21310831 | |
| eggNOG | COG1609 | |
| HOGENOM | HOG000220179 | |
| KO | K02529 | |
| OMA | YQIINAE | |
| OrthoDB | EOG6SJJMM | |
| BioCyc | CAULONA1000:CCNA_03161-MONOMER | |
| Proteomes | UP000001364 | |
| GO | GO:0003677 GO:0003700 GO:0006351 | |
| Gene3D | 1.10.260.40 | |
| InterPro | IPR010982 IPR028082 IPR000843 | |
| Pfam | PF00356 | |
| PRINTS | PR00036 | |
| SMART | SM00354 | |
| SUPFAM | SSF47413 SSF53822 | |
| PROSITE | PS00356 PS50932 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0006355 |
regulation of transcription, DNA-dependent |
ECO:0000314 |
P |
Figure 3 shows that in the absence of D-xylose, XylR binds to operator sites overlapping promoters of xylose-inducible genes, preventing initiation of transcription by RNA polymerase. When d-xylose is present, it binds to XylR, stabilizing a conformation with greatly reduced affinity for DNA and freeing xylose-inducible promoters for expression. |
complete | |||||
| GO:0003677 |
DNA binding |
ECO:0000314 |
F |
Figure 3B shows a gel mobility shift assay displaying XylR-DNA complexes, therefore this shows that xylR can bind to DNA. |
complete | |||||
| GO:0005622 |
intracellular |
ECO:0000314 |
C |
Figure 3 shows residual xylR-DNA complexes via a gel mobility shift assay in vitro and since DNA is located in the nucleus, this proves that the protein xylR is intracellular. |
complete | |||||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000323 |
imported automatically asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Stephens, C et al. (2007) Regulation of D-xylose metabolism in Caulobacter crescentus by a LacI-type repressor. J. Bacteriol. 189 8828-34 PubMed GONUTS page
