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It is now the 6th OPEN Period for CACAO Spring 2018! It will end on Monday April 23, 2018 at 05:59 pm CDT
This is your chance to make annotations OR challenge other team's annotations. You may also DEFEND or suggest improvements to your own annotations IF they have been challenged. Please note, although we ENCOURAGE challenges, an excess of identical challenges that do not appear to be applicable to the annotation or well thought out will be considered spam and ignored.

It is now the 4th OPEN Period for CACAO Phage Hunters 2018! It will end on Sunday April 22, 2018 at 11:59 pm CDT
This is your chance to make annotations OR challenge other team's annotations. You may also DEFEND or suggest improvements to your own annotations IF they have been challenged. Please note, although we ENCOURAGE challenges, an excess of identical challenges that do not appear to be applicable to the annotation or well thought out will be considered spam and ignored.

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CAEEL:COL40

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Species (Taxon ID) Caenorhabditis elegans. (6239)
Gene Name(s) col-40
Protein Name(s) Cuticle collagen 40
External Links
UniProt P34804
EMBL L15419
FO080410
PIR T32458
T37286
RefSeq NP_493913.2
UniGene Cel.894
PaxDb P34804
PRIDE P34804
EnsemblMetazoa T13B5.4
GeneID 173495
KEGG cel:CELE_T13B5.4
UCSC T13B5.4
CTD 173495
WormBase T13B5.4
eggNOG NOG248517
GeneTree ENSGT00610000086159
HOGENOM HOG000085656
InParanoid P34804
OMA EFCKHRT
OrthoDB EOG76T9X1
NextBio 879901
Proteomes UP000001940
GO GO:0005581
GO:0005576
GO:0042302
GO:0040002
InterPro IPR002486
IPR008160
Pfam PF01484
PF01391
SMART SM01088

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005576

extracellular region

PMID:8299960[1]

NAS: Non-traceable Author Statement

C

Seeded From UniProt

complete

GO:0005581

collagen trimer

GO_REF:0000037

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0176

C

Seeded From UniProt

complete

GO:0040002

collagen and cuticulin-based cuticle development

PMID:8299960[1]

NAS: Non-traceable Author Statement

P

Seeded From UniProt

complete

GO:0042302

structural constituent of cuticle

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002486

F

Seeded From UniProt

complete

GO:0042302

structural constituent of cuticle

GO_REF:0000037

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0193

F

Seeded From UniProt

complete

GO:0042302

structural constituent of cuticle

PMID:8299960[1]

NAS: Non-traceable Author Statement

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Levy, AD & Kramer, JM (1993) Identification, sequence and expression patterns of the Caenorhabditis elegans col-36 and col-40 collagen-encoding genes. Gene 137 281-5 PubMed GONUTS page