GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
BPR69:Q7Y5B1
Contents
| Species (Taxon ID) | Enterobacteria phage RB69 (Bacteriophage RB69). (12353) | |
| Gene Name(s) | soc (ECO:0000313 with EMBL:AAP75929.1) | |
| Protein Name(s) | Soc small outer capsid protein (ECO:0000313 with EMBL:AAP75929.1) | |
| External Links | ||
| UniProt | Q7Y5B1 | |
| EMBL | AY303349 | |
| RefSeq | NP_861717.1 | |
| PDB | 3IG9 3IGE | |
| PDBsum | 3IG9 3IGE | |
| SMR | Q7Y5B1 | |
| GeneID | 1494143 | |
| KEGG | vg:1494143 | |
| OrthoDB | VOG090001JH | |
| EvolutionaryTrace | Q7Y5B1 | |
| Proteomes | UP000000876 | |
| GO | GO:0019028 | |
| InterPro | IPR031743 | |
| Pfam | PF16855 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0039624 |
viral outer capsid |
ECO:0000255 |
|
C |
Figure 6a shows how the structure of the RB69 soc protein fits into a cryo EM model of the T4 capsid through trimeric interactions, where the major capsid protein gp23 of T4 has a 94% sequence identity to the major capsid protein of RB69. Fitting was done through the use of the EMFIT program, originally developed by Michael Rossmann (2000) (PMID:10998631[2]). The stereo diagrams of the protein structure was derived from the RESOLVE program shown in Figure 2b using the amino acid sequence shown in Figure 2a. Figure 7b shows how six trimers of the soc (shown in red) assemble around each major capsid protein gp23 hexamer (each shown in blue, black, green, or magenta), acting to stabilize the connection between each capsid protein, a key characteristic of an outer capsid protein. A larger view that shows the stabilizing cage of the whole phage capsid can be seen in Figure 7a, with the red representing the soc proteins. |
complete | ||||
|
part_of |
GO:0019028 |
viral capsid |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0098021 |
viral capsid, decoration |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000674897 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0019028 |
viral capsid |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0098021 |
viral capsid, decoration |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0019012 |
virion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Qin, L et al. (2010) Structure of the small outer capsid protein, Soc: a clamp for stabilizing capsids of T4-like phages. J. Mol. Biol. 395 728-41 PubMed GONUTS page
- ↑ 2.0 2.1 Rossmann, MG (2000) Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56 1341-9 PubMed GONUTS page
