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BACSU:YOKF
Contents
Species (Taxon ID) | Bacillus subtilis (strain 168). (224308) | |
Gene Name(s) | yokF | |
Protein Name(s) | SPBc2 prophage-derived endonuclease YokF | |
External Links | ||
UniProt | O32001 | |
EMBL | AL009126 | |
RefSeq | NP_390044.1 | |
ProteinModelPortal | O32001 | |
SMR | O32001 | |
STRING | 224308.BSU21610 | |
PaxDb | O32001 | |
EnsemblBacteria | CAB14079 | |
GeneID | 939113 | |
KEGG | bsu:BSU21610 | |
PATRIC | 18976121 | |
GenoList | BSU21610 | |
eggNOG | COG1525 | |
HOGENOM | HOG000017398 | |
InParanoid | O32001 | |
KO | K01174 | |
OMA | LACEASN | |
OrthoDB | EOG618QQ7 | |
BioCyc | BSUB:BSU21610-MONOMER | |
Proteomes | UP000001570 | |
GO | GO:0005886 GO:0004519 GO:0046872 GO:0004518 GO:0003676 GO:0090305 | |
Gene3D | 2.40.50.90 | |
InterPro | IPR008613 IPR016071 IPR002071 | |
Pfam | PF05901 PF00565 | |
SMART | SM00894 SM00318 | |
SUPFAM | SSF50199 | |
PROSITE | PS51257 PS01284 PS50830 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0004518 |
nuclease activity |
ECO:0000315 |
F |
Fig. 5: DNase activity in cell-free extracts from wild-type and yokF deficient mutants exhibits nuclease activity. |
complete | |||||
enables |
GO:0004518 |
nuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0035121 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004518 |
nuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0035121 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004519 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Sakamoto, JJ et al. (2001) Purification and characterization of a Bacillus subtilis 168 nuclease, YokF, involved in chromosomal DNA degradation and cell death caused by thermal shock treatments. J. Biol. Chem. 276 47046-51 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page