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BACSU:YOKF

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Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) yokF
Protein Name(s) SPBc2 prophage-derived endonuclease YokF
External Links
UniProt O32001
EMBL AL009126
RefSeq NP_390044.1
ProteinModelPortal O32001
SMR O32001
STRING 224308.BSU21610
PaxDb O32001
EnsemblBacteria CAB14079
GeneID 939113
KEGG bsu:BSU21610
PATRIC 18976121
GenoList BSU21610
eggNOG COG1525
HOGENOM HOG000017398
InParanoid O32001
KO K01174
OMA LACEASN
OrthoDB EOG618QQ7
BioCyc BSUB:BSU21610-MONOMER
Proteomes UP000001570
GO GO:0005886
GO:0004519
GO:0046872
GO:0004518
GO:0003676
GO:0090305
Gene3D 2.40.50.90
InterPro IPR008613
IPR016071
IPR002071
Pfam PF05901
PF00565
SMART SM00894
SM00318
SUPFAM SSF50199
PROSITE PS51257
PS01284
PS50830

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0004518

nuclease activity

PMID:11584000[1]

ECO:0000315

F

Fig. 5: DNase activity in cell-free extracts from wild-type and yokF deficient mutants exhibits nuclease activity.

complete
CACAO 4298

enables

GO:0004518

nuclease activity

PMID:11584000[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0035121
MGI:MGI:1924735
MGI:MGI:1929266
PANTHER:PTN000266556
TAIR:locus:2159218
TAIR:locus:2183359

C

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0035121
PANTHER:PTN000266556
TAIR:locus:2078486
UniProtKB:O32001
UniProtKB:Q8II01

F

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004519

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002071

F

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002071

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Sakamoto, JJ et al. (2001) Purification and characterization of a Bacillus subtilis 168 nuclease, YokF, involved in chromosomal DNA degradation and cell death caused by thermal shock treatments. J. Biol. Chem. 276 47046-51 PubMed GONUTS page
  2. 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page