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BACSU:YMDB
Contents
| Species (Taxon ID) | Bacillus subtilis (strain 168). (224308) | |
| Gene Name(s) | ymdB | |
| Protein Name(s) | Uncharacterized protein ymdB | |
| External Links | ||
| UniProt | O31775 | |
| EMBL | AL009126 | |
| PIR | G69884 | |
| RefSeq | NP_389579.2 | |
| PDB | 4B2O | |
| PDBsum | 4B2O | |
| ProteinModelPortal | O31775 | |
| SMR | O31775 | |
| STRING | 224308.BSU16970 | |
| PaxDb | O31775 | |
| EnsemblBacteria | CAB13570 | |
| GeneID | 939441 | |
| KEGG | bsu:BSU16970 | |
| PATRIC | 18975201 | |
| GenoList | BSU16970 | |
| eggNOG | COG1692 | |
| HOGENOM | HOG000011009 | |
| InParanoid | O31775 | |
| KO | K09769 | |
| OMA | PTADAQI | |
| OrthoDB | EOG68DD2S | |
| PhylomeDB | O31775 | |
| BioCyc | BSUB:BSU16970-MONOMER RETL1328306-WGS:GSTH-3535-MONOMER | |
| Proteomes | UP000001570 | |
| GO | GO:0016787 | |
| InterPro | IPR004843 IPR005235 IPR029052 | |
| Pfam | PF00149 | |
| PIRSF | PIRSF004789 | |
| SUPFAM | SSF56300 | |
| TIGRFAMs | TIGR00282 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0004113 |
2',3'-cyclic-nucleotide 3'-phosphodiesterase activity |
ECO:0000314 |
F |
Table 4: Shows kinetics of YmdB against 2'3' cyclic mononucleotides |
complete | |||||
| GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
ECO:0000314 |
F |
Table 4: Shows kinetics with 3'5' cyclic mononucleotides |
complete | |||||
| GO:1902201 |
negative regulation of bacterial-type flagellar cell motility |
ECO:0000315 |
P |
Fig. 1 Shows accumulation of flagellin Hag in YmdB deletion strain |
complete | |||||
| GO:1900192 |
positive regulation of single-species biofilm formation |
ECO:0000315 |
P |
Fig 2: Shows visual effects of biofilm production using a YmdB deletion mutant. YmdB deletion mutants are unable to form biofilms. |
complete | |||||
|
enables |
GO:0004113 |
2',3'-cyclic-nucleotide 3'-phosphodiesterase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004113 |
2',3'-cyclic-nucleotide 3'-phosphodiesterase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002190809 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008663 |
2',3'-cyclic-nucleotide 2'-phosphodiesterase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Diethmaier, C et al. (2014) The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis. J. Bacteriol. 196 265-75 PubMed GONUTS page
- ↑ 2.0 2.1 Diethmaier, C et al. (2011) A novel factor controlling bistability in Bacillus subtilis: the YmdB protein affects flagellin expression and biofilm formation. J. Bacteriol. 193 5997-6007 PubMed GONUTS page
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
