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BACSU:RBGA

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Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) rbgA (synonyms: ylqF)
Protein Name(s) Ribosome biogenesis GTPase A
External Links
UniProt O31743
EMBL AL009126
PIR F69880
RefSeq NP_389487.1
PDB 1PUJ
PDBsum 1PUJ
ProteinModelPortal O31743
SMR O31743
STRING 224308.BSU16050
PaxDb O31743
EnsemblBacteria CAB13478
GeneID 940134
KEGG bsu:BSU16050
PATRIC 18975015
GenoList BSU16050
eggNOG COG1161
HOGENOM HOG000003788
InParanoid O31743
KO K14540
OMA KSTSVAN
OrthoDB EOG6G4VXH
PhylomeDB O31743
BioCyc BSUB:BSU16050-MONOMER
EvolutionaryTrace O31743
Proteomes UP000001570
GO GO:0005737
GO:0005525
GO:0003924
GO:0003723
GO:0006184
GO:0042254
Gene3D 1.10.1580.10
3.40.50.300
InterPro IPR030378
IPR023179
IPR019991
IPR006073
IPR016478
IPR027417
Pfam PF01926
PIRSF PIRSF006230
SUPFAM SSF52540
TIGRFAMs TIGR03596
PROSITE PS51721

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0003924

GTPase activity

PMID:16431913[1]

ECO:0000314

F

Figrue 2: Consistent with YlqF association with the 50 S subunit, GTPase activity was stimulated in the presence of 50 S subunit, but not 30 S subunit (Fig. 2B). No activity of YlqF with the 50 S subunit-treated RNaseA was observed (Fig. 2B). Our results indicate that 50 S is indispensable for the GTPase activity of YlqF.

complete
CACAO 10086

enables

GO:0003924

GTPase activity

PMID:16431913[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

GO:0003723

RNA binding

PMID:16431913[1]

ECO:0000314

F

Figure 4: Recovered YlqF was saturated following the addition of 2-fold excess protein to the 50 S subunit, indicating that two molecules of YlqF bind a 50 S subunit (Fig. 3).

complete
CACAO 10087

enables

GO:0003924

GTPase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000119717
TAIR:locus:2140270
UniProtKB:O31743
UniProtKB:Q9BT17

F

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006073
InterPro:IPR030378

F

Seeded From UniProt

complete

involved_in

GO:0042254

ribosome biogenesis

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0690

P

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0342

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Matsuo, Y et al. (2006) The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis. J. Biol. Chem. 281 8110-7 PubMed GONUTS page
  2. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page