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BACSU:RBGA
Contents
| Species (Taxon ID) | Bacillus subtilis (strain 168). (224308) | |
| Gene Name(s) | rbgA (synonyms: ylqF) | |
| Protein Name(s) | Ribosome biogenesis GTPase A | |
| External Links | ||
| UniProt | O31743 | |
| EMBL | AL009126 | |
| PIR | F69880 | |
| RefSeq | NP_389487.1 | |
| PDB | 1PUJ | |
| PDBsum | 1PUJ | |
| ProteinModelPortal | O31743 | |
| SMR | O31743 | |
| STRING | 224308.BSU16050 | |
| PaxDb | O31743 | |
| EnsemblBacteria | CAB13478 | |
| GeneID | 940134 | |
| KEGG | bsu:BSU16050 | |
| PATRIC | 18975015 | |
| GenoList | BSU16050 | |
| eggNOG | COG1161 | |
| HOGENOM | HOG000003788 | |
| InParanoid | O31743 | |
| KO | K14540 | |
| OMA | KSTSVAN | |
| OrthoDB | EOG6G4VXH | |
| PhylomeDB | O31743 | |
| BioCyc | BSUB:BSU16050-MONOMER | |
| EvolutionaryTrace | O31743 | |
| Proteomes | UP000001570 | |
| GO | GO:0005737 GO:0005525 GO:0003924 GO:0003723 GO:0006184 GO:0042254 | |
| Gene3D | 1.10.1580.10 3.40.50.300 | |
| InterPro | IPR030378 IPR023179 IPR019991 IPR006073 IPR016478 IPR027417 | |
| Pfam | PF01926 | |
| PIRSF | PIRSF006230 | |
| SUPFAM | SSF52540 | |
| TIGRFAMs | TIGR03596 | |
| PROSITE | PS51721 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003924 |
GTPase activity |
ECO:0000314 |
F |
Figrue 2: Consistent with YlqF association with the 50 S subunit, GTPase activity was stimulated in the presence of 50 S subunit, but not 30 S subunit (Fig. 2B). No activity of YlqF with the 50 S subunit-treated RNaseA was observed (Fig. 2B). Our results indicate that 50 S is indispensable for the GTPase activity of YlqF. |
complete | |||||
|
enables |
GO:0003924 |
GTPase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
| GO:0003723 |
RNA binding |
ECO:0000314 |
F |
Figure 4: Recovered YlqF was saturated following the addition of 2-fold excess protein to the 50 S subunit, indicating that two molecules of YlqF bind a 50 S subunit (Fig. 3). |
complete | |||||
|
enables |
GO:0003924 |
GTPase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000119717 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005525 |
GTP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042254 |
ribosome biogenesis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Matsuo, Y et al. (2006) The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis. J. Biol. Chem. 281 8110-7 PubMed GONUTS page
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page