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BACSU:OPUD

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Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) opuD (synonyms: ytfQ)
Protein Name(s) Glycine betaine transporter OpuD
External Links
UniProt P54417
EMBL U50082
AF008220
AL009126
PIR G69670
RefSeq NP_390885.1
WP_003229220.1
ProteinModelPortal P54417
SMR P54417
STRING 224308.BSU30070
TCDB 2.A.15.1.1
PaxDb P54417
EnsemblBacteria CAB14985
GeneID 937986
KEGG bsu:BSU30070
PATRIC 18977918
GenoList BSU30070
eggNOG COG1292
HOGENOM HOG000053240
InParanoid P54417
KO K05020
OMA DDWLKIN
OrthoDB EOG6D8B89
PhylomeDB P54417
BioCyc BSUB:BSU30070-MONOMER
Proteomes UP000001570
GO GO:0016021
GO:0005886
GO:0005215
GO:0031460
InterPro IPR018093
IPR000060
Pfam PF02028
TIGRFAMs TIGR00842
PROSITE PS01303

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0031460

glycine betaine transport

PMID:8752321[1]

ECO:0000315

P

Fig 5: Exponentially growing cells of strain RMKB8 (opuA opuC opuD+) were subjected to a sudden osmotic upshock by adding NaCl to the SMM growth medium to a final concentration of 0.4 M NaCl. There was an immediate stimulation of the rate of glycine betaine uptake after the osmotic upshock, and the rate of glycine betaine transport continued to rise over a period of 90 min.

complete
CACAO 2688

involved_in

GO:0031460

glycine betaine transport

PMID:8752321[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10112
EcoGene:EG11561
EcoGene:EG13508
PANTHER:PTN001247333

C

Seeded From UniProt

complete

involved_in

GO:0055085

transmembrane transport

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0022857

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000060

C

Seeded From UniProt

complete

enables

GO:0022857

transmembrane transporter activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000060

F

Seeded From UniProt

complete

involved_in

GO:0071705

nitrogen compound transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000060

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Kappes, RM et al. (1996) Three transport systems for the osmoprotectant glycine betaine operate in Bacillus subtilis: characterization of OpuD. J. Bacteriol. 178 5071-9 PubMed GONUTS page
  2. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page