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BACSU:CODY

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Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) codY
Protein Name(s) GTP-sensing transcriptional pleiotropic repressor CodY

Vegetative protein 286B VEG286B

External Links
UniProt P39779
EMBL U13634
AL009126
PIR S61496
RefSeq NP_389499.1
PDB 2B0L
2B18
2GX5
2HGV
PDBsum 2B0L
2B18
2GX5
2HGV
ProteinModelPortal P39779
SMR P39779
IntAct P39779
MINT MINT-8366926
STRING 224308.BSU16170
PhosSite P0802197
PaxDb P39779
EnsemblBacteria CAB13490
GeneID 936491
KEGG bsu:BSU16170
PATRIC 18975039
GenoList BSU16170
eggNOG COG4465
HOGENOM HOG000058075
KO K03706
OMA EKHNEVE
OrthoDB EOG60GRZT
PhylomeDB P39779
BioCyc BSUB:BSU16170-MONOMER
EvolutionaryTrace P39779
Proteomes UP000001570
GO GO:0005737
GO:0003677
GO:0005525
GO:0003700
GO:0045892
GO:0006355
GO:0006351
Gene3D 1.10.10.10
HAMAP MF_00621
InterPro IPR014154
IPR010312
IPR013198
IPR011991
Pfam PF06018
PF08222
PIRSF PIRSF011572
TIGRFAMs TIGR02787

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0006355

regulation of transcription, DNA-dependent

PMID:19542274[1]

ECO:0000315

P

Figure 5.

complete
CACAO 2633

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:19542274[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:21699902[2]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:18083814[3]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:21699902[2]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:18083814[3]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:15228537[4]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:21699902[2]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032993

protein-DNA complex

PMID:15228537[4]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:21699902[2]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:18083814[3]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:21699902[2]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:18083814[3]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:15228537[4]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:21699902[2]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001217

DNA-binding transcription repressor activity

PMID:15228537[4]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:21699902[2]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:18083814[3]

ECO:0005667

site-directed mutagenesis phenotypic evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:21699902[2]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:18083814[3]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:15228537[4]

ECO:0005631

DNAse footprinting evidence used in manual assertion

RefSeq:NC_000964.3

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:21699902[2]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:15228537[4]

ECO:0001807

electrophoretic mobility shift assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002219681
UniProtKB:P39779

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010312
InterPro:IPR014154

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR014154

F

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010312
InterPro:IPR014154

F

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR014154

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000098226

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000098226

C

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000098226

F

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0342

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

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Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Preis, H et al. (2009) CodY activates transcription of a small RNA in Bacillus subtilis. J. Bacteriol. 191 5446-57 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Belitsky, BR & Sonenshein, AL (2011) Roadblock repression of transcription by Bacillus subtilis CodY. J. Mol. Biol. 411 729-43 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Belitsky, BR & Sonenshein, AL (2008) Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis. J. Bacteriol. 190 1224-36 PubMed GONUTS page
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 Shivers, RP & Sonenshein, AL (2004) Activation of the Bacillus subtilis global regulator CodY by direct interaction with branched-chain amino acids. Mol. Microbiol. 53 599-611 PubMed GONUTS page
  5. ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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