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ARATH:SIGA

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Species (Taxon ID) Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s) SIGA (synonyms: RPOD1, SIG1, SIG2, SIGB)
Protein Name(s) RNA polymerase sigma factor sigA

Sigma factor A Sigma-A RNA polymerase sigma factor sig1 Atsig1 Sigma factor 1 RNA polymerase sigma factor sig2 Atsig2 Sigma factor 2 RNA polymerase sigma factor sigB Sigma factor B Sigma-B

External Links
UniProt O24629
EMBL D89993
AB019942
AB004821
AF015542
Y14252
AF024590
AC006193
CP002684
CP002684
AF325036
AY062526
AY093306
AK316773
Y14567
PIR H96671
T52642
RefSeq NP_001185314.1
NP_176666.1
UniGene At.25556
ProteinModelPortal O24629
SMR O24629
IntAct O24629
MINT MINT-8294379
STRING 3702.AT1G64860.1-P
PRIDE O24629
EnsemblPlants AT1G64860.1
GeneID 842794
KEGG ath:AT1G64860
GeneFarm 25
TAIR AT1G64860
eggNOG COG0568
InParanoid O24629
KO K03086
OMA ENSKTFR
PhylomeDB O24629
Proteomes UP000006548
Genevestigator O24629
GO GO:0009507
GO:0003677
GO:0001053
GO:0003700
GO:0016987
GO:0071482
GO:0071461
GO:0006352
GO:0080005
GO:2001141
GO:0006355
Gene3D 1.10.10.10
InterPro IPR014284
IPR000943
IPR007627
IPR007624
IPR007630
IPR013325
IPR013324
IPR011991
Pfam PF04542
PF04539
PF04545
PRINTS PR00046
SUPFAM SSF88659
SSF88946
TIGRFAMs TIGR02937
PROSITE PS00715

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:2001141

regulation of RNA biosynthetic process

PMID:12602869[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0080005

photosystem stoichiometry adjustment

PMID:20498041[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071482

cellular response to light stimulus

PMID:10555304[3]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071482

cellular response to light stimulus

PMID:11959137[4]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071482

cellular response to light stimulus

PMID:9405719[5]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071482

cellular response to light stimulus

PMID:9280303[6]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071461

cellular response to redox state

PMID:20498041[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0009507

chloroplast

PMID:9405719[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:20498041[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006352

DNA-templated transcription, initiation

PMID:10734058[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0016987

sigma factor activity

PMID:12602869[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0016987

sigma factor activity

PMID:9280303[6]

ECO:0000250

sequence similarity evidence used in manual assertion

F

Seeded From UniProt

Missing: with/from

part_of

GO:0009507

chloroplast

PMID:10555304[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:2000142

regulation of DNA-templated transcription, initiation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0016987

P

Seeded From UniProt

complete

involved_in

GO:2000142

regulation of DNA-templated transcription, initiation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0016987

P

Seeded From UniProt

complete

involved_in

GO:2000142

regulation of DNA-templated transcription, initiation

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0016987

P

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR013325
InterPro:IPR014284

F

Seeded From UniProt

complete

involved_in

GO:0006352

DNA-templated transcription, initiation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR013325
InterPro:IPR014284

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR013325
InterPro:IPR014284

P

Seeded From UniProt

complete

involved_in

GO:0006352

DNA-templated transcription, initiation

PMID:9280303[6]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0016987

sigma factor activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0731

F

Seeded From UniProt

complete

part_of

GO:0009536

plastid

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0934

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0731

P

Seeded From UniProt

complete

part_of

GO:0009507

chloroplast

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0150
UniProtKB-SubCell:SL-0049

C

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Privat, I et al. (2003) Characterization of Arabidopsis plastid sigma-like transcription factors SIG1, SIG2 and SIG3. Plant Mol. Biol. 51 385-99 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 Shimizu, M et al. (2010) Sigma factor phosphorylation in the photosynthetic control of photosystem stoichiometry. Proc. Natl. Acad. Sci. U.S.A. 107 10760-4 PubMed GONUTS page
  3. ↑ 3.0 3.1 Kanamaru, K et al. (1999) Plastidic RNA polymerase sigma factors in Arabidopsis. Plant Cell Physiol. 40 832-42 PubMed GONUTS page
  4. ↑ Tsunoyama, Y et al. (2002) Blue light specific and differential expression of a plastid sigma factor, Sig5 in Arabidopsis thaliana. FEBS Lett. 516 225-8 PubMed GONUTS page
  5. ↑ 5.0 5.1 Isono, K et al. (1997) Leaf-specifically expressed genes for polypeptides destined for chloroplasts with domains of sigma70 factors of bacterial RNA polymerases in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 94 14948-53 PubMed GONUTS page
  6. ↑ 6.0 6.1 6.2 Tanaka, K et al. (1997) Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: evidence for the sigma factor heterogeneity in higher plant plastids. FEBS Lett. 413 309-13 PubMed GONUTS page
  7. ↑ Hakimi, MA et al. (2000) Evolutionary conservation of C-terminal domains of primary sigma(70)-type transcription factors between plants and bacteria. J. Biol. Chem. 275 9215-21 PubMed GONUTS page
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