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ARATH:IRX9
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | IRX9 | |
| Protein Name(s) | Probable beta-1,4-xylosyltransferase IRX9
Protein IRREGULAR XYLEM 9 Xylan xylosyltransferase IRX9 | |
| External Links | ||
| UniProt | Q9ZQC6 | |
| EMBL | AC006260 CP002685 BT015044 BT015838 | |
| PIR | D84788 | |
| RefSeq | NP_181246.1 | |
| UniGene | At.26964 At.67134 | |
| ProteinModelPortal | Q9ZQC6 | |
| SMR | Q9ZQC6 | |
| STRING | 3702.AT2G37090.1-P | |
| CAZy | GT43 | |
| PaxDb | Q9ZQC6 | |
| PRIDE | Q9ZQC6 | |
| EnsemblPlants | AT2G37090.1 | |
| GeneID | 818285 | |
| KEGG | ath:AT2G37090 | |
| TAIR | AT2G37090 | |
| eggNOG | NOG308705 | |
| HOGENOM | HOG000237518 | |
| InParanoid | Q9ZQC6 | |
| OMA | RELDVHG | |
| PhylomeDB | Q9ZQC6 | |
| BioCyc | ARA:AT2G37090-MONOMER | |
| PRO | PR:Q9ZQC6 | |
| Proteomes | UP000006548 | |
| Genevestigator | Q9ZQC6 | |
| GO | GO:0005794 GO:0000139 GO:0016021 GO:0015018 GO:0042285 GO:0071555 GO:0010417 GO:0010413 GO:0009834 | |
| Gene3D | 3.90.550.10 | |
| InterPro | IPR005027 IPR029044 | |
| PANTHER | PTHR10896 | |
| Pfam | PF03360 | |
| SUPFAM | SSF53448 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0042285 |
xylosyltransferase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010417 |
glucuronoxylan biosynthetic process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
AGI_LocusCode:AT5G54690 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010413 |
glucuronoxylan metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009834 |
plant-type secondary cell wall biogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0042285 |
xylosyltransferase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000096299 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010417 |
glucuronoxylan biosynthetic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000096299 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009834 |
plant-type secondary cell wall biogenesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000096299 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0000139 |
Golgi membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000096174 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0015018 |
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0071555 |
cell wall organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000139 |
Golgi membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Brown, DM et al. (2007) Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J. 52 1154-68 PubMed GONUTS page
- ↑ Persson, S et al. (2007) The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell 19 237-55 PubMed GONUTS page
- ↑ 3.0 3.1 Peña, MJ et al. (2007) Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis. Plant Cell 19 549-63 PubMed GONUTS page
- ↑ Brown, DM et al. (2005) Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17 2281-95 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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