GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
9CAUD:A0A0K2D0H6
Contents
| Species (Taxon ID) | Bacillus phage TsarBomba. (1690456) | |
| Gene Name(s) | No Information Provided. | |
| Protein Name(s) | RNA polymerase sigma factor (ECO:0000313 with EMBL:ALA13223.1) | |
| External Links | ||
| UniProt | A0A0K2D0H6 | |
| EMBL | KT224359 | |
| RefSeq | YP_009207005.1 | |
| GeneID | 26633453 | |
| GO | GO:0003677 GO:0016987 GO:0003700 GO:0006352 | |
| Gene3D | 1.10.10.10 | |
| InterPro | IPR014284 IPR000943 IPR007627 IPR007630 IPR013325 IPR013324 IPR011991 | |
| Pfam | PF04542 PF04545 | |
| PRINTS | PR00046 | |
| SUPFAM | SSF88659 SSF88946 | |
| TIGRFAMs | TIGR02937 | |
| PROSITE | PS00716 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0016987 |
sigma factor activity |
ECO:0000317 |
|
F |
HHpred consistently showed the first section of the gene being homologous to a B.subtilis sigma factor followed by a translocase. For its similarity to sigma B factor, it had a probability of 99.97 and a E-value of 1.3e-28. In addition, numerous blast results showed many B. subtitles sigma factors with reasonable similarity to the first portion of the gene. The best blast result for sigma factor B had a query cover of 43% and a E-value of 5e-27. This strongly suggests that this gene is homologous to sigma factor B as well as sigma factors from B. subtilis in general, suggesting that it likely functions as one. |
complete | ||||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006352 |
DNA-templated transcription, initiation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Boylan, SA et al. (1993) Transcription factor sigma B of Bacillus subtilis controls a large stationary-phase regulon. J. Bacteriol. 175 3957-63 PubMed GONUTS page
