| Challenge | Ivanerill,
? | 2015-04-01 09:16:34 CDT | If homology is established with Hhpred, then the evidence code should not be IGC. Look at the possible evidence codes and the Phage Hunters GO_REF
| None, yet. |
Public
Assessment | Sefa1 | 2015-05-03 23:55:09 CDT | What are BLASTP alignment scores/e-values etc. for other two reference proteins? Either provide them too or remove them from with/from section.
| Requires Changes
✔ Protein
✔ Publication
✔ Qualifier
✔ Go term
✔ Evidence
✔ With/From
✔ Notes
✔ Unique/Original
|
Public
Assessment | DanielRenfro | 2015-04-01 10:18:26 CDT | This annotation has been flagged because it has been edited since last assessment
| Qualifier |
GO ID |
GO term name |
Reference |
Evidence Code |
with/from |
Aspect |
Notes |
Status
|
|
GO:0009055 |
electron carrier activity |
PMID:8694750 |
ISA: Inferred from Sequence Alignment |
UniProtKB:P26492
UniProtKB:Q8VQF4
UniProtKB:Q9UHB4
|
F |
HHPred shows a match with flavodoxin in the Bacterium Desulfovibrio desulfuricans with probability 100.0, e-value 3.5E-29, p value 1E-33.
Flavodoxins are proteins that bind flavin mononucleotide(FMN) and are used in electron transfer pathways and redox potentials. PMID:8694750.
Blastp showed the presence of conserved regions in the Flavodoxin family of proteins. Given the conservation of the protein and the match with several other proteins, it can be inferred that the protein has a similar structure and function to flavodoxin found in other organisms.||complete
CACAO 10824
| on 9CAUD:S5Y026
| Flagged
|
Public
Assessment | DanielRenfro | 2015-04-01 10:00:06 CDT | This annotation has been flagged because it has been edited since last assessment
| Qualifier |
GO ID |
GO term name |
Reference |
Evidence Code |
with/from |
Aspect |
Notes |
Status
|
|
GO:0009055 |
electron carrier activity |
PMID:8694750 |
IGC: Inferred from Genomic Context |
UniProtKB:UniProtKB:P00323
UniProtKB:Q8VQF4
|
F |
HHPred shows a match with flavodoxin in the Bacterium Desulfovibrio desulfuricans with probability 100.0, e-value 3.5E-29, p value 1E-33.
Flavodoxins are proteins that bind flavin mononucleotide(FMN) and are used in electron transfer pathways and redox potentials. PMID:8694750.
Blastp showed the presence of conserved regions in the Flavodoxin family of proteins. Given the conservation of the protein and the match with several other proteins, it can be inferred that the protein has a similar structure and function to flavodoxin found in other organisms.||complete
CACAO 10824
| on 9CAUD:S5Y026
| Flagged
|
Public
Assessment | DanielRenfro | 2015-04-01 09:58:56 CDT | This annotation has been flagged because it has been edited since last assessment
| Qualifier |
GO ID |
GO term name |
Reference |
Evidence Code |
with/from |
Aspect |
Notes |
Status
|
|
GO:8694750 |
electron carrier activity |
PMID:19465766 |
IGC: Inferred from Genomic Context |
UniProtKB:P00323
UniProtKB:Q8VQF4
UniProtKB:||F||HHPred shows a match with flavodoxin in the Bacterium Desulfovibrio desulfuricans with probability 100.0, e-value 3.5E-29, p value 1E-33.
Flavodoxins are proteins that bind flavin mononucleotide(FMN) and are used in electron transfer pathways and redox potentials. PMID:8694750.
Blastp showed the presence of conserved regions in the Flavodoxin family of proteins. Given the conservation of the protein and the match with several other proteins, it can be inferred that the protein has a similar structure and function to flavodoxin found in other organisms.||Missing: Valid GO ID
CACAO 10824
| on 9CAUD:S5Y026
| Flagged
|
Public
Assessment | DanielRenfro | 2015-04-01 09:16:34 CDT | This annotation has been flagged because it has been challenged since last assessment
| Flagged
|
Private
Assessment | Ivanerill | 2015-03-31 20:45:04 CDT | You need to be an instructor to view these notes. | Requires Changes
✗ Evidence
|
