Category:ASM JGI challenge

Scoreboard

Class Information

Welcome to another exciting biocuration competition using the Gene Ontology!

Remember - annotate using Gene Ontology terms to describe the attributes (functions, processes, cellular locations) of the protein(s) described in the paper(s).

Papers for each team

• PMID:15555931 - ASM_JGI_one
• PMID:16461638 - ASM_JGI_two
• PMID:19060141 - ASM_JGI_three
• PMID:19181804 - ASM_JGI_four

Extra papers

• If you hate the paper I assigned to your team, feel free to browse these...
• PMID:19921179
• PMID:22493433

Schedule

Handy and Important Links While Annotating

• Cacao_rules
• uniprot.org - Proteins
• GO terms from the top of the ontology - GO terms on GONUTS
• QuickGO from EBI - another place to search for GO terms
• GO evidence code documentation - documentation on using evidence codes

Permitted Evidence Codes for CACAO

• we are down to seven permitted evidence codes for CACAO biocurators:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

See Also

• Evaluating_CACAO_annotations
• CACAO - general information about the class
• ASM-JGI CACAO training ppt for download