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TableEdit
ECOLI:RNE
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| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status | |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
public |
GO:0004519 |
endonuclease activity |
PMID:9790196 |
ECO:0000314 |
F |
Two forms of RNA were used, linear and circular. The circular RNA did not have a 5' end and thus could not be digested by RNase E as shown in Figure 2a. The circular RNA was then digested by RNase H and thus linearized as shown in Figure 2b. The now linearized RNA was then digested by RNase E which since the RNA was linear could be digested by RNase E as shown in Figure 2d and Figure 2e. The bands shown in Figures 2d,e are consistent with the digestion sites of both RNase H and RNase E. |
complete | ||||
|
protected |
enables |
GO:0017151 |
DEAD/H-box RNA helicase binding |
PMID:15236960 |
ECO:0000353 |
physical interaction evidence used in manual assertion |
UniProtKB:P0A8J8 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:1902280 |
regulation of ATP-dependent RNA helicase activity |
PMID:15236960 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
enables |
GO:0003723 |
RNA binding |
PMID:15236960 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | ||
|
protected |
enables |
GO:0008312 |
7S RNA binding |
PMID:15236960 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0006364 |
rRNA processing |
PMID:21873635 |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11299 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0042802 |
identical protein binding |
PMID:18682225 |
ECO:0000353 |
physical interaction evidence used in manual assertion |
UniProtKB:P21513 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0042802 |
identical protein binding |
PMID:15236960 |
ECO:0000353 |
physical interaction evidence used in manual assertion |
UniProtKB:P21513 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0051289 |
protein homotetramerization |
PMID:14636052 |
ECO:0000353 |
physical interaction evidence used in manual assertion |
UniProtKB:P21513 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0008995 |
ribonuclease E activity |
PMID:12417756 |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0008033 |
tRNA processing |
PMID:11871663 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0006402 |
mRNA catabolic process |
PMID:1846032 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0006401 |
RNA catabolic process |
PMID:8415644 |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0000967 |
rRNA 5'-end processing |
PMID:10329633 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
enables |
GO:0000287 |
magnesium ion binding |
PMID:25404697 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
GO_REF:0000108 |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004519 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
GO_REF:0000108 |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0090501 |
RNA phosphodiester bond hydrolysis |
GO_REF:0000108 |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004540 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0090501 |
RNA phosphodiester bond hydrolysis |
GO_REF:0000108 |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0008995 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0090501 |
RNA phosphodiester bond hydrolysis |
GO_REF:0000108 |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0008995 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
GO_REF:0000108 |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004521 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0003676 |
nucleic acid binding |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR003029 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0003723 |
RNA binding |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR004659 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0004540 |
ribonuclease activity |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR004659 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0006396 |
RNA processing |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR004659 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0008995 |
ribonuclease E activity |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR028878 |
F |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0005737 |
cytoplasm |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0004521 |
endoribonuclease activity |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0006402 |
mRNA catabolic process |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
P |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0009898 |
cytoplasmic side of plasma membrane |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0000287 |
magnesium ion binding |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0006364 |
rRNA processing |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0003723 |
RNA binding |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0008033 |
tRNA processing |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
P |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0008270 |
zinc ion binding |
GO_REF:0000104 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112759 |
F |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0005886 |
plasma membrane |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0003723 |
RNA binding |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0694 |
F |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0016020 |
membrane |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0472 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0046872 |
metal ion binding |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0479 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0004519 |
endonuclease activity |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0255 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0006364 |
rRNA processing |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0698 |
P |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0005737 |
cytoplasm |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0963 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0016787 |
hydrolase activity |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0378 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0004518 |
nuclease activity |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0540 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0008033 |
tRNA processing |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0819 |
P |
Seeded From UniProt |
complete |
| Cancel |
