Main Page

GONUTS is a Gene Ontology Normal Usage Tracking System.

The GONUTS wiki has been set up to provide third-party documentation for users of the Gene Ontology Project. The GO wiki is not an official product of the GO consortium. It was built by users at TAMU for newcomers to GO who want to explore GO usage. The rationale for this wiki is described in About GONUTS.

To enter the ontology pages, go to the GO page, or search for a term*. For more information about how this wiki is automatically updated, see GO wiki scripts. For Help using the system, see Help:Contents, which is available in the navigation links from all pages.

• See Current events for what's new with the GONUTS wiki.
• Leave comments and suggestions on our Known Issues page.

Genomes currently covered by GONUTS Saccharomyces cerevisiae from SGD Dictyostelium discoideum from dictyBase Caenorhabditis elegans from WormBase Drosophila melanogaster from FlyBase Mus musculus from MGI Danio rerio from ZFIN Arabidopsis thaliana from TAIR Schizosaccharomyces pombe from [http://] Gallus gallus from AgBase more coming... For GO terms being considered for obsoletion, see Category:GO:Proposed for obsoletion

GO News Feed news4go: New January 2012 Renal GO Annotation Newsletter http://t.co/GIqWDVB3 news4go: New January 2012 Renal GO Annotation Newsletter http://t.co/GIqWDVB3 news4go: New GO Annotation Publication in PLoS ONE http://t.co/wjs6qqnq news4go: New GO Annotation Publication in PLoS ONE http://t.co/wjs6qqnq news4go: Cardiovascular GO Annotation Initiative Newsletter Jan 12 http://t.co/j0b4jgLS news4go: Cardiovascular GO Annotation Initiative Newsletter Jan 12 http://t.co/j0b4jgLS news4go: New GO annotation pipeline for plant proteins http://t.co/Uy5sG7M news4go: New GO annotation pipeline for plant proteins http://t.co/Uy5sG7M news4go: GO Weekly Ontology Report for 9 July 2011 http://tinyurl.com/6hfd2nt news4go: GO Weekly Ontology Report for 9 July 2011 http://tinyurl.com/6hfd2nt

CACAO

• Community Assessment of Community Annotation with Ontologies (CACAO) information or Feel free to email Brenley or Jim with questions.
• FAQs about the protein pages used for the competition
• Computational Documentation of CACAO

Searching GONUTS

• Enter some keywords into the search box on the left...the wiki will look for matches in the GO terms or in the commentary. By default we search in the Categories, which is where the GO terms are, and in the Articles, which includes pages on genes from different organisms.
• Or go to the Special:Search page, where you can set which namespaces are searched.

Joining GONUTS

GONUTS is currently set up so anyone can view or search, but only registered users can edit or add pages. Currently registered users can create new users, and we are working to add at least one registered user for each participating database (So far we have registered users at EcoliHub, EcoCyc, GOA, BeeBase, SGD, dictyBase, FlyBase, WormBase, TAIR, Rat Genome Database, ZFIN, MGI, UCL and AgBase .. please edit this if I forgot you!)

Feel free to email Brenley or Jim with account questions or requests.