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HUMAN:OGFD1

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Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

public

GO:0043022

ribosome binding

PMID:24550447

ECO:0000314

F

See Figure 3. In A, a 100-kDa species in an immunoprecipitation is consistent with the weight of a hypothetical OGFOD1-RPS23 complex. Other experiments on this figure support this. RPS23 is a ribosomal binding site.

complete
CACAO 9922

public

GO:0043022

ribosome binding

PMID:24550447

ECO:0000314

F

See Figure 3. In A, a 100-kDa species in an immunoprecipitation is consistent with the weight of a hypothetical OGFOD1-RPS23 complex. Other experiments on this figure support this. RPS23 is a ribosomal binding site.

complete

public

GO:0006449

regulation of translational termination

PMID:24550447

ECO:0000315

P

Figure 5 shows that OGFOD1 knockouts are less likely to terminate at a nonsense codon. This implies that OGFOD1 modulates translation termination efficiency. A catalytically inactive mutant also terminates earlier, similar to the knockout. This suggests that it is the ribosomal binding function of OGFOD1 that regulates the translational termination.

complete
CACAO 9923

public

GO:0019511

peptidyl-proline hydroxylation

PMID:24550447

ECO:0000314

P

Figure S4A shows that OGFOD1 does in vitro hydroxylation of a peptide derived from RPS23, assayed by mass spec.

complete
CACAO 9925

protected

involved_in

GO:0019511

peptidyl-proline hydroxylation

PMID:24550447

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0006449

regulation of translational termination

PMID:24550447

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0034063

stress granule assembly

PMID:24550447

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0031544

peptidyl-proline 3-dioxygenase activity

PMID:24550462

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0031543

peptidyl-proline dioxygenase activity

PMID:24550447

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

involved_in

GO:0018126

protein hydroxylation

PMID:24550462

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0018126

protein hydroxylation

PMID:24550447

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

part_of

GO:0010494

cytoplasmic stress granule

PMID:24550447

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:0008283

cell population proliferation

PMID:24550447

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0006449

regulation of translational termination

PMID:24550447

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0031543

peptidyl-proline dioxygenase activity

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0265189
PANTHER:PTN000251752
PomBase:SPBC6B1.08c
UniProtKB:Q8N543

F

Seeded From UniProt

complete

protected

involved_in

GO:0019511

peptidyl-proline hydroxylation

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0265189
PANTHER:PTN000251752
UniProtKB:Q8N543

P

Seeded From UniProt

complete

protected

involved_in

GO:0006449

regulation of translational termination

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000251752
UniProtKB:Q8N543

P

Seeded From UniProt

complete

protected

part_of

GO:0005737

cytoplasm

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0265189
PANTHER:PTN000251752

C

Seeded From UniProt

complete

protected

part_of

GO:0005829

cytosol

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0005634

nucleus

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0016706

2-oxoglutarate-dependent dioxygenase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR019601

F

Seeded From UniProt

complete

protected

enables

GO:0031418

L-ascorbic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006620
InterPro:IPR019601

F

Seeded From UniProt

complete

protected

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005123
InterPro:IPR006620
InterPro:IPR019601

P

Seeded From UniProt

complete

protected

enables

GO:0005506

iron ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006620
InterPro:IPR019601

F

Seeded From UniProt

complete

protected

enables

GO:0016491

oxidoreductase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005123

F

Seeded From UniProt

complete

protected

enables

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006620

F

Seeded From UniProt

complete

protected

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

protected

enables

GO:0031418

L-ascorbic acid binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0847

F

Seeded From UniProt

complete

protected

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

protected

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

P

Seeded From UniProt

complete

protected

enables

GO:0016491

oxidoreductase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

F

Seeded From UniProt

complete

protected

enables

GO:0051213

dioxygenase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0223

F

Seeded From UniProt

complete

protected

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete




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