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TableEdit
ARATH:ISE2
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| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status | |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
public |
GO:0016554 |
cytidine to uridine editing |
PMID:28346704 |
ECO:0000315 |
P |
ISE2 in A. thaliana. Figure 2. Loss of ISE2 compromises C-to-U RNA editing at specific sites. 6 sites known to undergo C-to-U editing are monitored, with a marked decrease in editing in cells with silenced ISE2. |
complete | ||||
|
protected |
enables |
GO:0003723 |
RNA binding |
PMID:26147377 |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | ||
|
public |
GO:0000373 |
Group II intron splicing |
PMID:28346704 |
ECO:0000315 |
P |
ISE2 in A. thaliana. Figure 4. ISE2 is required for splicing of a group II intron in ycf3 transcripts. Verified using qPCR and gel electrophoresis showing an increase in the unspliced variant of the intron. |
complete | ||||
|
protected |
involved_in |
GO:0006397 |
mRNA processing |
PMID:26147377 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
public |
GO:1901259 |
chloroplast rRNA processing |
PMID:28346704 |
ECO:0000315 |
P |
ISE2 in A. thaliana. Figure 5. Loss of ISE2 leads to defects in rRNA processing. With silenced ISE2, aberrant forms of rRNA are visualized with gel electrophoresis when compared to overexpressed ISE2 and control cells. |
complete | ||||
|
protected |
involved_in |
GO:0000373 |
Group II intron splicing |
PMID:26147377 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
part_of |
GO:0009507 |
chloroplast |
PMID:26147377 |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0016441 |
posttranscriptional gene silencing |
PMID:17601829 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0010497 |
plasmodesmata-mediated intercellular transport |
PMID:11874921 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0010497 |
plasmodesmata-mediated intercellular transport |
PMID:17601829 |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
part_of |
GO:0010494 |
cytoplasmic stress granule |
PMID:17601829 |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
protected |
involved_in |
GO:0009793 |
embryo development ending in seed dormancy |
PMID:11874921 |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
protected |
part_of |
GO:0009570 |
chloroplast stroma |
PMID:18633119 |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
protected |
part_of |
GO:0009507 |
chloroplast |
PMID:22106293 |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
protected |
part_of |
GO:0009507 |
chloroplast |
PMID:18431481 |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
protected |
enables |
GO:0003724 |
RNA helicase activity |
PMID:17601829 |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
Missing: with/from | ||
|
protected |
enables |
GO:0003676 |
nucleic acid binding |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR011545 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0005524 |
ATP binding |
GO_REF:0000002 |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR011545 |
F |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0009507 |
chloroplast |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0150 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0000166 |
nucleotide binding |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0547 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0003723 |
RNA binding |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0694 |
F |
Seeded From UniProt |
complete | |
|
protected |
part_of |
GO:0009536 |
plastid |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0934 |
C |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0005524 |
ATP binding |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0067 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0004386 |
helicase activity |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0347 |
F |
Seeded From UniProt |
complete | |
|
protected |
enables |
GO:0016787 |
hydrolase activity |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0378 |
F |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0006397 |
mRNA processing |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0507 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0008380 |
RNA splicing |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0508 |
P |
Seeded From UniProt |
complete | |
|
protected |
involved_in |
GO:0031047 |
gene silencing by RNA |
GO_REF:0000037 |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0943 |
P |
Seeded From UniProt |
complete |
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