GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

TableEdit

Jump to: navigation, search

RAT:NMDZ1

You don't have sufficient rights on this wiki to edit tables. Perhaps you need to log in. Changes you make in the Table editor will not be saved back to the wiki

See Help for Help on this wiki. See the documentation for how to use the table editor

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

public

GO:0045202

synapse

PMID:19450252

ECO:0000314

C

Figure 6D showed that patching of Nlgn1 clustered NR1 at synaptic location.

complete

protected

enables

GO:0001540

amyloid-beta binding

PMID:17308309

ECO:0000314

direct assay evidence used in manual assertion

F

  • occurs_in:(GO:0097060)
  • occurs_in:(UBERON:0001890)
  • positively_regulates:(GO:0060402)|occurs_in(GO:0097060)
  • occurs_in:(UBERON:0001890)
  • positively_regulates:(GO:1903409)

Seeded From UniProt

complete

protected

part_of

GO:0009986

cell surface

PMID:17526495

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0005737

cytoplasm

PMID:17526495

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:0051290

protein heterotetramerization

PMID:24876489

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:24876489

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0016594

glycine binding

PMID:24876489

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:24876489

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0005887

integral component of plasma membrane

PMID:24876489

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:2001056

positive regulation of cysteine-type endopeptidase activity

PMID:17526495

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q00960

P

  • occurs_in:(CL:0002608)
  • regulates_o_occurs_in:(CL:0002608)

Seeded From UniProt

complete

protected

involved_in

GO:0010524

positive regulation of calcium ion transport into cytosol

PMID:17308309

ECO:0000316

genetic interaction evidence used in manual assertion

ComplexPortal:CPX-1134

P

  • regulates_o_occurs_in:(CL:0002608)
  • positively_regulates:(GO:1903409)

Seeded From UniProt

complete

protected

part_of

GO:0097060

synaptic membrane

PMID:17308309

ECO:0000353

physical interaction evidence used in manual assertion

ComplexPortal:CPX-1134

C

part_of:(UBERON:0001890)

Seeded From UniProt

complete

protected

enables

GO:0044877

protein-containing complex binding

PMID:17308309

ECO:0000353

physical interaction evidence used in manual assertion

ComplexPortal:CPX-1134

F

  • occurs_in:(GO:0097060)
  • occurs_in:(UBERON:0001890)
  • positively_regulates:(GO:0060402)|occurs_in(GO:0097060)
  • occurs_in:(UBERON:0001890)
  • positively_regulates:(GO:1903409)

Seeded From UniProt

complete

protected

involved_in

GO:1903428

positive regulation of reactive oxygen species biosynthetic process

PMID:17308309

ECO:0000316

genetic interaction evidence used in manual assertion

ComplexPortal:CPX-1134

P

regulates_o_occurs_in:(CL:0002608)

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:18177891

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0005887

integral component of plasma membrane

PMID:18177891

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:18177891

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:28384476

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0005887

integral component of plasma membrane

PMID:28384476

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:28384476

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

involved_in

GO:2000463

positive regulation of excitatory postsynaptic potential

PMID:12930820

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

part_of

GO:0060076

excitatory synapse

PMID:19730411

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0032590

dendrite membrane

PMID:15620359

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0016595

glutamate binding

PMID:8011339

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0016594

glycine binding

PMID:8011339

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

involved_in

GO:1902952

positive regulation of dendritic spine maintenance

PMID:17360908

ECO:0000316

genetic interaction evidence used in manual assertion

ComplexPortal:CPX-1120,UniProtKB:P05067:VAR_000023

P

regulates_o_occurs_in:(CL:1001571)

Seeded From UniProt

complete

protected

enables

GO:1904315

transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential

PMID:12160751

ECO:0006063

over expression analysis evidence used in manual assertion

F

  • occurs_in:(GO:0098978)
  • occurs_in:(UBERON:0002421)

Seeded From UniProt

complete

protected

enables

GO:1904315

transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential

PMID:12160751

ECO:0006013

patch-clamp recording evidence used in manual assertion

F

  • occurs_in:(GO:0098978)
  • occurs_in:(UBERON:0002421)

Seeded From UniProt

complete

protected

enables

GO:0099507

ligand-gated ion channel activity involved in regulation of presynaptic membrane potential

PMID:19666514

ECO:0006063

over expression analysis evidence used in manual assertion

F

occurs_in:(UBERON:0002037)

Seeded From UniProt

complete

protected

enables

GO:0099507

ligand-gated ion channel activity involved in regulation of presynaptic membrane potential

PMID:19666514

ECO:0006054

pharmacological assay evidence used in manual assertion

F

occurs_in:(UBERON:0002037)

Seeded From UniProt

complete

protected

enables

GO:0099507

ligand-gated ion channel activity involved in regulation of presynaptic membrane potential

PMID:19666514

ECO:0006013

patch-clamp recording evidence used in manual assertion

F

occurs_in:(UBERON:0002037)

Seeded From UniProt

complete

protected

part_of

GO:0099061

integral component of postsynaptic density membrane

PMID:23159309

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(GO:0098686)

Seeded From UniProt

complete

protected

part_of

GO:0099056

integral component of presynaptic membrane

PMID:19666514

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(GO:0098688)

Seeded From UniProt

complete

protected

part_of

GO:0098978

glutamatergic synapse

PMID:12160751

ECO:0006063

over expression analysis evidence used in manual assertion

C

part_of:(UBERON:0002421)

Seeded From UniProt

complete

protected

part_of

GO:0098978

glutamatergic synapse

PMID:12160751

ECO:0006013

patch-clamp recording evidence used in manual assertion

C

part_of:(UBERON:0002421)

Seeded From UniProt

complete

protected

part_of

GO:0098688

parallel fiber to Purkinje cell synapse

PMID:19666514

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0098686

hippocampal mossy fiber to CA3 synapse

PMID:23159309

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:1900149

positive regulation of Schwann cell migration

PMID:26656067

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0071287

cellular response to manganese ion

PMID:19643132

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0060992

response to fungicide

PMID:19591855

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0051592

response to calcium ion

PMID:19761817

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0051262

protein tetramerization

PMID:22493736

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0048511

rhythmic process

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0046983

protein dimerization activity

PMID:22493736

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0046982

protein heterodimerization activity

PMID:21544205

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

part_of

GO:0045202

synapse

PMID:25526735

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0044307

dendritic branch

PMID:10618500

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0043197

dendritic spine

PMID:17207780

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0043195

terminal bouton

PMID:19666514

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0043083

synaptic cleft

PMID:17207780

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0043025

neuronal cell body

PMID:10618500

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0042165

neurotransmitter binding

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0035254

glutamate receptor binding

PMID:19298817

ECO:0000353

physical interaction evidence used in manual assertion

RGD:2737
RGD:2738

F

Seeded From UniProt

complete

protected

involved_in

GO:0035235

ionotropic glutamate receptor signaling pathway

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0022843

voltage-gated cation channel activity

PMID:17050728

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0019902

phosphatase binding

PMID:15102920

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0019899

enzyme binding

PMID:15069201

ECO:0000353

physical interaction evidence used in manual assertion

RGD:620556

F

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:22493736

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:17050728

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0016594

glycine binding

PMID:22098737

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

involved_in

GO:0014075

response to amine

PMID:19918184

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0014070

response to organic cyclic compound

PMID:19322657

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

protected

part_of

GO:0014069

postsynaptic density

PMID:21314939

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0014069

postsynaptic density

PMID:17207780

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:0010942

positive regulation of cell death

PMID:20168047

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0005102

signaling receptor binding

PMID:12408866

ECO:0000353

physical interaction evidence used in manual assertion

RGD:2518

F

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:17050728

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:22098737

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0004970

ionotropic glutamate receptor activity

PMID:16477151

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0010399
MGI:MGI:95819
PANTHER:PTN001451205
RGD:2736
UniProtKB:Q05586

C

Seeded From UniProt

complete

protected

part_of

GO:0005886

plasma membrane

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004620
FB:FBgn0052704
MGI:MGI:95808
MGI:MGI:95813
MGI:MGI:95816
PANTHER:PTN000437926
RGD:621531
TAIR:locus:2207165
UniProtKB:Q12879
UniProtKB:Q13224
UniProtKB:Q16478
WB:WBGene00001612

C

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:21873635

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0010399
MGI:MGI:95819
PANTHER:PTN001451205
RGD:2736
UniProtKB:Q05586

F

Seeded From UniProt

complete

protected

part_of

GO:0045202

synapse

PMID:17003121

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0045202

synapse

PMID:15978582

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

part_of

GO:0045202

synapse

PMID:15681343

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:7929101

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95820

F

Seeded From UniProt

complete

protected

involved_in

GO:0034220

ion transmembrane transport

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0005216

P

Seeded From UniProt

complete

protected

involved_in

GO:0034220

ion transmembrane transport

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0022843

P

Seeded From UniProt

complete

protected

involved_in

GO:0060078

regulation of postsynaptic membrane potential

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:1904315

P

Seeded From UniProt

complete

protected

involved_in

GO:0060078

regulation of postsynaptic membrane potential

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:1904315

P

Seeded From UniProt

complete

protected

involved_in

GO:0098655

cation transmembrane transport

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0022843

P

Seeded From UniProt

complete

protected

involved_in

GO:0099505

regulation of presynaptic membrane potential

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0099507

P

Seeded From UniProt

complete

protected

involved_in

GO:0099505

regulation of presynaptic membrane potential

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0099507

P

Seeded From UniProt

complete

protected

involved_in

GO:0099505

regulation of presynaptic membrane potential

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0099507

P

Seeded From UniProt

complete

protected

enables

GO:0004970

ionotropic glutamate receptor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001320
InterPro:IPR019594

F

Seeded From UniProt

complete

protected

enables

GO:0005216

ion channel activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001508

F

Seeded From UniProt

complete

protected

involved_in

GO:0006811

ion transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001508

P

Seeded From UniProt

complete

protected

part_of

GO:0016020

membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001320
InterPro:IPR001508
InterPro:IPR019594

C

Seeded From UniProt

complete

protected

enables

GO:0038023

signaling receptor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001508

F

Seeded From UniProt

complete

protected

part_of

GO:0017146

NMDA selective glutamate receptor complex

PMID:12535174

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

protected

involved_in

GO:0007611

learning or memory

PMID:12535174

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0004972

NMDA glutamate receptor activity

PMID:12535174

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0004970

ionotropic glutamate receptor activity

PMID:12535174

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

protected

part_of

GO:0005886

plasma membrane

Reactome:R-RNO-9618659
Reactome:R-RNO-9617436
Reactome:R-RNO-9617322
Reactome:R-RNO-9614351
Reactome:R-RNO-9614350
Reactome:R-RNO-9614228
Reactome:R-RNO-9612145

ECO:0000304

author statement supported by traceable reference used in manual assertion







C

Seeded From UniProt

complete

protected

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

protected

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

protected

involved_in

GO:0006811

ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0406

P

Seeded From UniProt

complete

protected

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

protected

part_of

GO:0045202

synapse

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0770

C

Seeded From UniProt

complete

protected

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

protected

part_of

GO:0045211

postsynaptic membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0628
UniProtKB-SubCell:SL-0219

C

Seeded From UniProt

complete

protected

part_of

GO:0014069

postsynaptic density

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0297

C

Seeded From UniProt

complete




Cancel