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User:Sedmondson

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CACAO Spring 2015

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableMOUSE:ST2B12015-02-09 14:52:27 CSTGO:0050294 steroid sulfotransferase activity (F)PMID:23674610ECO:0000315 mutant phenotype evidence used in manual assertion

The evidence and experiment suggests necessary information about steroid sulfotransferase activity

challenge
unacceptableHUMAN:MYG2015-02-09 14:55:59 CSTGO:0001570 vasculogenesis (P)PMID:25649247ECO:0000316 genetic interaction evidence used in manual assertion

The evidence concluded from their testing on birds allows answers on mRNA expression of globin genes in nucleated and anucleated erythrocytes

challenge
unacceptableYEAST:GET32015-02-09 14:57:45 CSTGO:0005524 ATP binding (F)PMID:22547793ECO:0000315 mutant phenotype evidence used in manual assertion

Figures 1-6 provide the necessary information

challenge
correctedthroughchallengesMOUSE:NIT22015-02-09 15:00:05 CSTGO:0050152 omega-amidase activity (F)PMID:19464248ECO:0000314 direct assay evidence used in manual assertion

The paper suggests necessary information and evidence about omega-amidase activity

challenge
requireschangesSALTY:ACKA2015-02-09 15:05:31 CSTGO:0008776 acetate kinase activity (F)PMID:25642214ECO:0000315 mutant phenotype evidence used in manual assertion

This study provides necessary information by inactivating genes and seeing the effects

challenge
unacceptableECOLI:GYRB2015-02-09 15:09:33 CSTGO:0003916 DNA topoisomerase activity (F)PMID:24899021ECO:0000314 direct assay evidence used in manual assertion

The Table and Figure presented in the paper includes the necessary results

challenge
unacceptableECOLI:DEF2015-02-09 15:10:57 CSTGO:0042586 peptide deformylase activity (F)PMID:23815882ECO:0000314 direct assay evidence used in manual assertion

The study suggests necessary information about peptide deformylase activity

challenge
unacceptableRAT:PLS12015-02-09 15:34:42 CSTGO:0005515 protein binding (F)PMID:23621864ECO:0000315 mutant phenotype evidence used in manual assertion

Figures 1-4 provide the necessary results

challenge
correctedthroughchallengesRAT:UT22015-02-09 15:37:16 CSTGO:0015840 urea transport (P)PMID:23552862ECO:0000315 mutant phenotype evidence used in manual assertion

The research and experiments done provide necessary information about urea transport

challenge
unacceptableMYCTU:LSR22015-02-09 15:40:14 CSTGO:0003677 DNA binding (F)PMID:23396914ECO:0000314 direct assay evidence used in manual assertion

The data from the Figures represents the influence of gene expression.

challenge
unacceptableDROME:PERO2015-02-09 15:58:25 CSTGO:0055114 oxidation-reduction process (P)PMID:24459295ECO:0000315 mutant phenotype evidence used in manual assertion

The Mutations observed allow the activity to be found.

challenge
unacceptable9SPER:G8J6U42015-02-09 16:06:14 CSTGO:0009523 photosystem II (C)PMID:25615587ECO:0000315 mutant phenotype evidence used in manual assertion

This study focuses on the effects of Photosystem 2 which provides ultimately providing necessary information

challenge
requireschangesYEAST:SEE12015-02-09 17:45:35 CSTGO:0008168 methyltransferase activity (F)PMID:23671032ECO:0000315 mutant phenotype evidence used in manual assertion

Through reading domains, this study provides the necessary information about lysine methyltransferase

challenge
requireschangesHUMAN:EZRI2015-02-10 09:31:50 CSTGO:0005515 protein binding (F)PMID:25618778ECO:0000315 mutant phenotype evidence used in manual assertion

The study analyzes expression and sub-cellular distribution allowing for the necessary information

challenge
correctedthroughchallengesHUMAN:PSN22015-02-10 09:38:28 CSTGO:0030900 forebrain development (P)PMID:25429133ECO:0000314 direct assay evidence used in manual assertion

The paper and experiment suggests necessary information on forebrain development

challenge
requireschangesMYCAR:ARCA2015-02-10 09:48:03 CSTGO:0016990 arginine deiminase activity (F)PMID:25538192ECO:0000315 mutant phenotype evidence used in manual assertion

The experiment and evidence suggests necessary information about arginine deiminase activity

challenge
unacceptablePIG:STF12015-02-10 09:55:17 CSTGO:0003677 DNA binding (F)PMID:25604140ECO:0000314 direct assay evidence used in manual assertion

The tables in this paper presents the functions.

challenge
requireschangesNEUCR:PNG12015-02-10 10:00:07 CSTGO:0003684 damaged DNA binding (F)PMID:20502699ECO:0000314 direct assay evidence used in manual assertion

The Figures in this paper provide the necessary evidence.

challenge
unacceptableCHICK:NO662015-02-10 11:44:23 CSTGO:0004089 carbonate dehydratase activity (F)PMID:25521423ECO:0000314 direct assay evidence used in manual assertion

The NMR studies in this research provides the necessary results

challenge
unacceptableMOUSE:EST2C2015-02-18 16:14:16 CSTGO:0047619 acylcarnitine hydrolase activity (F)PMID:6151001ECO:0000314 direct assay evidence used in manual assertion

This paper performs an experiment to provide necessary information about acylcarnitine hydrolase activities and function.

challenge
correctedthroughchallengesHUMAN:EST12015-02-18 16:26:15 CSTGO:0016787 hydrolase activity (F)PMID:25462813ECO:0000314 direct assay evidence used in manual assertion

This paper looks at and tests the functions of liver carboxylesterase 1 which includes necessary information for the annotation

challenge
unacceptableHUMAN:EST22015-02-18 16:29:53 CSTGO:0004091 carboxylesterase activity (F)PMID:22300094ECO:0000315 mutant phenotype evidence used in manual assertion

This paper describes how the importance of Cocaine esterase and how it can have a positive effect on individuals with an addiction to Cocaine. From this, Figures 1-4 provide necessary information about the annotation.

challenge
correctedthroughchallengesMOUSE:PLA2R2015-02-18 16:39:30 CSTGO:0004623 phospholipase A2 activity (F)PMID:25623068ECO:0000314 direct assay evidence used in manual assertion

This paper tests the effects of phospholipase A2 activity and provides necessary information for the annotation.

challenge
requireschangesHUMAN:LIPH2015-02-18 16:42:43 CSTGO:0016787 hydrolase activity (F)PMID:25123262ECO:0000314 direct assay evidence used in manual assertion

This paper discusses the effects and functions of Lipase member H and provides necessary information for the annotation.

challenge
unacceptablePECCA:PLY12015-02-18 16:49:39 CSTGO:0030570 pectate lyase activity (F)PMID:23999922ECO:0000316 genetic interaction evidence used in manual assertion

This paper studies the effects and function of Pectate lyase 1 and provides necessary information for the annotation by studying the introns and exons and various other aspects.

challenge
requireschangesHUMAN:EP3002015-02-18 17:48:07 CSTGO:0004402 histone acetyltransferase activity (F)PMID:25644304ECO:0000314 direct assay evidence used in manual assertion

This paper provides necessary information about the function and use of histone acetyltransferase 300 that is useful for the making of this annotation.

challenge
unacceptableSALTI:RNT2015-02-18 18:02:46 CSTGO:0004518 nuclease activity (F)PMID:22735700ECO:0000314 direct assay evidence used in manual assertion

This paper provides necessary information about the function and structure of Ribonuclease T2 and includes Figures 1-6 that are used to thoroughly display need evidence.

challenge
requireschangesMOUSE:CUL12015-02-19 10:12:53 CSTGO:0016567 protein ubiquitination (P)PMID:24819753ECO:0000314 direct assay evidence used in manual assertion

This paper constructs an experiment to test the effect of Cullin-1 on tumors and its process in protein ubiquitination which provides necessary information for this annotation.

challenge
unacceptableHUMAN:CUL32015-02-19 10:17:04 CSTGO:0016567 protein ubiquitination (P)PMID:24518042ECO:0000314 direct assay evidence used in manual assertion

This paper discusses the effect of Cullin-3 and its role in ubiquitination which provides necessary information for this annotation.

challenge
requireschangesHUMAN:CUL52015-02-19 10:21:25 CSTGO:0016567 protein ubiquitination (P)PMID:23304509ECO:0000314 direct assay evidence used in manual assertion

This paper constructs an experiment that discovers the function of Cullin-5 and its role in ubiquitination. With this, Figures 1-4 present useful and necessary information for this annotation.

challenge
requireschangesCAEEL:CUL22015-02-19 10:27:46 CSTGO:0016567 protein ubiquitination (P)PMID:18372249ECO:0000314 direct assay evidence used in manual assertion

The paper associated with the PubMed ID provides information about the function and role of Cullin-2 in ubiquitination. In this paper, Figures 1-6 provide necessary information and results that are important for this annotation.

challenge
requireschangesYEAST:MTCU12015-02-19 10:34:16 CSTGO:0046872 metal ion binding (F)PMID:23584994ECO:0000314 direct assay evidence used in manual assertion

This paper tests the effects of Copper metallothionein 1-1 and discusses its use in metal ion binding. With this, Figures 1-5 display necessary information for this annotation that describes how the copper-metallothionein helps protect against copper toxicity.

challenge
unacceptableCAMUP:Q4HRN82015-02-19 10:48:40 CSTGO:0008940 nitrate reductase activity (This discusses the function of nitrate reductase in plants and provides necessary information for the annotation. )PMID:25443843IDA: Inferred from Direct Assay
challenge

acceptable:0
unacceptable:17
requires_changes:11
flagged:0

Annotations challenged by Sedmondson

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
requireschangesBwagner,
Team Plants Just Wanna Have Sun
HUMAN:TDGGO:0006284 - base-excision repair (P)PMID:24948610ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableAbritten,
Team Medium Heat Tamales
MOUSE:CTNSPMID:25586965ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 4
correctedthroughchallengesBbourgoyne,
Team Bio Bois
DROME:Q9VIE8GO:0003994 - aconitate hydratase activity (F)PMID:22493725ECO:0000314 direct assay evidence used in manual assertionchallengeC: 6

fixed by Min.lorna
correctedthroughchallengesBbourgoyne,
Team Bio Bois
BRADU:NIFHGO:0016163 - nitrogenase activity (F)PMID:24062462ECO:0000314 direct assay evidence used in manual assertionchallengeC: 10

fixed by JChamblee1995
unacceptableBbourgoyne,
Team Bio Bois
MOUSE:CAPONGO:0004517 - nitric-oxide synthase activity (F)PMID:25621792ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableBbourgoyne,
Team Bio Bois
SERMA:NUCAGO:0004518 - nuclease activity (F)PMID:25405367ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableJderrickson,
Team Bio Bois
HUMAN:DUS19GO:0004651 - polynucleotide 5'-phosphatase activity (F)PMID:25641192ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
requireschangesJderrickson,
Team Bio Bois
HUMAN:RNAS2GO:0004540 - ribonuclease activity (F)PMID:25635455ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableJderrickson,
Team Bio Bois
THAPS:B8BWV6GO:0033681 - ATP-dependent 3'-5' DNA/RNA helicase activity (F)25579795:25579795ECO:0000314 direct assay evidence used in manual assertionchallengeC: 5
unacceptableJderrickson,
Team Bio Bois
BOVIN:Q547S4GO:0032023 - trypsinogen activation (P)PMID:25637872ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableJderrickson,
Team Bio Bois
HUMAN:RENIGO:0004195 - obsolete renin activity (F)PMID:25635129ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3
unacceptableJderrickson,
Team Bio Bois
HUMAN:PEPA3GO:0004194 - obsolete pepsin A activity (F)PMID:25633964ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableHbate,
Team Dos Juanitas
?GO:0004842 - ubiquitin-protein transferase activity ()PMID:25646469IDA: Inferred from Direct Assay challengeC: 2
acceptableMin.lorna,
Team Ood
BPPHS:EGO:0044659 - viral release from host cell by cytolysis (P)PMID:10760296ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
acceptableMin.lorna,
Team Ood
BPPHS:EGO:0039635 - suppression by virus of host peptidoglycan biosynthetic process (P)PMID:10760296ECO:0000316 genetic interaction evidence used in manual assertionchallengeC: 2

0 annotations fixed by Sedmondson

What do the icons mean in the status column?

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