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User:Navick

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CACAO Spring 2019

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableCAUVC:Q9A2232019-01-29 15:57:04 CSTGO:0000160 phosphorelay signal transduction system (P)PMID:16176121ECO:0001202 in vitro protein kinase assay evidence used in manual assertion

Figure 5 E shows Caulobacter crescentus protein cenR (CC3743/Cell Envelope Regulator) is involved in the phosphorelay signal transduction system.

challenge
acceptable9CAUD:H6X3Q52019-02-12 16:01:10 CSTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp098 (098, orf098, uncharacterized protein, RaK2 00098) has a molecular weight of 62.869 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
updatedbyinstructor9CAUD:A0A2P1CKP52019-03-19 14:27:06 CDTGO:0019012 virion (C)PMID:30366363ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3: Liquid Chromatography and Mass Spectroscopy indicate that ORF07 (gp7, Uncharacterized Protein, Vid5_gp07) is present in the organism Pantoea phage vB_PagS_Vid5.

challenge
updatedbyinstructor9CAUD:A0A2P1CKR02019-03-19 14:29:09 CDTGO:0019012 virion (C)PMID:30366363ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 Liquid Chromatography and Mass Spectroscopy indicate that ORF13 (gp13, Neck Protein, Vid5_gp13) is present in the organism Pantoea phage vB_PagS_Vid5.

challenge
updatedbyinstructor9CAUD:A0A2P1CL062019-03-19 14:32:25 CDTGO:0019012 virion (C)PMID:30366363ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3: Liquid Chromatography and Mass Spectroscopy indicate that ORF99 (gp99, Lysis regulatory protein, Vid5_gp99) is present in the organism Pantoea phage vB_PagS_Vid5.

challenge
acceptable9CAUD:H6X4Y52019-03-19 14:35:39 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp528w (528, orf528, uncharacterized protein, RaK2 00528) has a molecular weight of 121.755 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3M92019-03-19 14:37:38 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp072 (072, orf072, uncharacterized protein, RaK2 00072) has a molecular weight of 15.024 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:I1TE502019-03-26 16:11:35 CDTGO:0019012 virion (C)PMID:22514640ECO:0005527 matrix-assisted laser desorption/ionization time-of-flight mass spectrometry evidence used in manual assertion

Table 3 and Figure 5 say that ORF150 (Major Head Protein) has a molecular weight of 32.6 kDa. The paper mentions the difference between this and the Uniprot value of 50.6 likely comes from post-translational processing of the protein.

Organism_uniprot: Escherichia virus AKFV33

Organism_paper: vB_EcoS_AKFV33

challenge
acceptable9CAUD:I1TE462019-03-26 16:17:46 CDTGO:0019012 virion (C)PMID:22514640ECO:0005527 matrix-assisted laser desorption/ionization time-of-flight mass spectrometry evidence used in manual assertion

Table 3 and Figure 5 say that ORF146 (Major Tail Protein) has a molecular weight of 51.7 kDa.

Organism_uniprot:Escherichia virus AKFV33

Organism_paper:vB_EcoS_AKFV33

challenge
acceptable9CAUD:I1TE372019-03-26 16:16:23 CDTGO:0019012 virion (C)PMID:22514640ECO:0005527 matrix-assisted laser desorption/ionization time-of-flight mass spectrometry evidence used in manual assertion

Table 3 and Figure 5 say that ORF137 (Tail Fiber Protein) has a molecular weight of 95.8 kDa.

Organism_uniprot:Escherichia virus AKFV33

Organism_paper:vB_EcoS_AKFV33

challenge
acceptable9CAUD:I1TE422019-03-26 16:19:53 CDTGO:0019012 virion (C)PMID:22514640ECO:0005527 matrix-assisted laser desorption/ionization time-of-flight mass spectrometry evidence used in manual assertion

Table 3 and Figure 5 say that ORF142 (Pore-forming tail tip protein) has a molecular weight of 121.1 kDa. The paper mentions the difference between this and the Uniprot value of 132.3 likely comes from post-translational processing of the protein.

Organism_uniprot:Escherichia virus AKFV33

Organism_paper:vB_EcoS_AKFV33

challenge
acceptable9CAUD:H6X3N62019-04-09 15:55:43 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp079w (079, orf079w, uncharacterized protein, RaK2 00079) has a molecular weight of 87.857 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3N82019-04-09 15:58:06 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp081w (081, orf081w, uncharacterized protein, RaK2 00081) has a molecular weight of 27.44 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3P82019-04-09 16:00:01 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp091 (091, orf091, uncharacterized protein, RaK2 00091) has a molecular weight of 28.209 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3V82019-04-09 16:01:33 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp151(151, orf151, uncharacterized protein, RaK2 00151) has a molecular weight of 20.561 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3W32019-04-09 16:03:30 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp156 (156, orf156, uncharacterized protein, RaK2 00156) has a molecular weight of 34.198 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3W72019-04-09 16:05:28 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp160 (160, orf160 uncharacterized protein, RaK2 00160) has a molecular weight of 87.718 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3Y22019-04-09 16:09:52 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp175 (175, orf175, uncharacterized protein, RaK2 00175) has a molecular weight of 21.079 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X3Y22019-04-09 16:09:52 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp175 (175, orf175, uncharacterized protein, RaK2 00175) has a molecular weight of 21.079 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X4402019-04-09 16:12:26 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp233 (233, orf233, uncharacterized protein, RaK2 00233) has a molecular weight of 30.971 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X4822019-04-09 16:14:34 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp275 (275, orf275, uncharacterized protein, RaK2 00275) has a molecular weight of 64.095 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
acceptable9CAUD:H6X4V02019-04-09 16:16:05 CDTGO:0019012 virion (C)PMID:23593293ECO:0007184 protein mass spectrometry evidence used in manual assertion

Table S3 and Figure 5 say that gp493 (493, orf493, uncharacterized protein, RaK2 00493) has a molecular weight of 21.475 kDa in Enterobacteria phage vB_KleM-RaK2.

challenge
updatedbyinstructorYEAST:FDC12019-04-11 21:35:46 CDTGO:1901067 ferulate catabolic process (P)PMID:30625138ECO:0001258 spectrophotometry evidence used in manual assertion

Figures 2 and 3 shows that Fdc1 (Ferulic acid decarboxylase 1) positively regulates the decarboxylation of ferulic acid in S. cerevisiae.

challenge
unacceptableYEAST:FDC12019-04-11 21:35:47 CDTGO:0006113 fermentation (P)PMID:30625138ECO:0007680 chromatography evidence used in manual assertion

Figure 4C shows that Fdc1 (Ferulic acid decarboxylase 1) positively regulates the production of 4VG in S. cerevisiae.

challenge
unacceptableYEAST:FDC12019-04-11 21:35:47 CDTGO:1901468 positive regulation of ferulate catabolic process (P)PMID:30625138ECO:0001258 spectrophotometry evidence used in manual assertion

Figures 2 and 3 shows that Fdc1 (Ferulic acid decarboxylase 1) positively regulates the decarboxylation of ferulic acid in S. eubayanus.

challenge
unacceptableYEAST:FDC12019-04-11 21:35:48 CDTGO:0006113 fermentation (P)PMID:30625138ECO:0007680 chromatography evidence used in manual assertion

Figure 4C shows that Fdc1 (Ferulic acid decarboxylase 1) positively regulates the production of 4VG in S. eubayanus.

challenge

acceptable:19
unacceptable:3
requires_changes:0
flagged:0

Annotations challenged by Navick

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history

0 annotations fixed by Navick