User:Giorda13

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	ARATH:RIN4	2012-04-09 14:13:10 CDT	GO:0034051 negative regulation of plant-type hypersensitive response (P)	PMID:11955429	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 5a. shows the rin4 mutant to have less disease progression than the complement and the wild type. 5B. shows the number of spores from the pathogen to be much higher in the rin4 mutants. 5c. shows the expression of PR-1 a protein directly involved in the plant hypersensitive response is higher in rin4 mutants than it is in wild type (Ws-O) and rin4 complements.	challenge
requireschanges	ARATH:TGA5	2012-04-09 14:14:40 CDT	GO:0009814 defense response, incompatible interaction (P)	PMID:12383081	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 6 shows the antisense lines that overexpress TGA5 to be less susceptible to infection by p. parasitica than the wild type. Also, Fig. 7 shows that this is independent of the Salicylate mediated defense pathway, as the defense response is observed in the nahG transgene background which abolishes SA/PR-1 mediated defense.	challenge
acceptable	ARATH:ICS1	2012-04-10 08:11:57 CDT	GO:0008909 isochorismate synthase activity (F)	PMID:11734859	ECO:0000247 sequence alignment evidence used in manual assertion	Fig. 2d indicates a clustal alignment of the Arabidpopsis ICS1 region with selected isochorismate synthases. Note the identical regions in black and the conserved regions in gray, as well as the critical regions shared for ICS activity (blue asterisk)	challenge
acceptable	PSESM:HPAB2	2012-04-09 14:18:38 CDT	GO:0009405 pathogenesis (P)	PMID:16792692	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig1. AvrPtoB inserted into vectors shows strong pathogenic response on bean and Arabidopsis compared to the empty vector control which only shows the hypersensitive response. Also the truncation of AvrPtoB from the c-terminus in different constructs leads to the eventual loss of pathogenesis on bean and Arabidopsis (1. b, c)	challenge
acceptable	XANEU:AVRB3	2012-04-09 14:20:09 CDT	GO:0009405 pathogenesis (P)	PMID:12118879	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 1a. Shows symptoms of a susceptible pepper leaf that was inoculated with either an empty vector Xanthomonas campestris pv. vesicatoria strain without AvrBs3 (no hypertrophy) or a strain that is expressing avrBs3 which clearly shows hypertrophy and pathogenesis. Fig 1b also shows the expression of avrBs3 in nicotiana clevlandii through agrobacterium mediated transformation which also elicits hypertrophy.	challenge
requireschanges	ERWAM:O54621	2012-04-10 07:59:20 CDT	GO:0050708 regulation of protein secretion (P)	PMID:20569339	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 1 shows the protein content from DspF mutants that exhibit little to no DspA/E secretion (a commonly secreted Hrp- protein) in the culture supernatant.	challenge

acceptable:4
unacceptable:0
requires_changes:2
flagged:0

Annotations challenged by Giorda13

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Giorda13

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	ARATH:RPM1	2012-03-29 11:28:01 CDT	GO:0009814 defense response, incompatible interaction (P)	PMID:7638602	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 2B. Complementation of rpm1 mutants with cosmid 1FB elicited hypersensitive response and inhibits growth of P. syringae DC3000, similar to the wild type controls. Empty vector mutants inoculated were unable to inhibit pathogen growth.	challenge

acceptable:0
unacceptable:0
requires_changes:1
flagged:0

Annotations challenged by Giorda13

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Giorda13