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Cacao

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Contributes toGO:0005886plasma membranePMID:27161310ECO:0005591 IDA: Inferred from Direct AssayCellular Component
complete
This annotation made on page: TREPA:TA17
By: JKelleher (group Team Purple A 2019) on 2019-03-08 18:04:58 CST.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
Private
Assessment
JimHu2019-05-30 01:44:08 CDTYou need to be an instructor to view these notes.Acceptable
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
Ivanerill2019-03-25 11:53:16 CDT

Good job!

Acceptable
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
34.200.222.932019-03-25 11:52:24 CDT

Good job!

Acceptable
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
DanielRenfro2019-03-24 18:23:05 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
Colocalizes with GO:0005886 plasma membrane PMID:27161310 ECO:0005592 IDA: Inferred from Direct Assay C other:UniProtKB- P29722 In Figure 3, Immuno-SEM, specifically using immunogold labeling, was utilized to analyze the position of TP0435 (also known as gene tpp17) on the plasma membrane. There was not much gold/antibiotic tagging when the outside of the B. burgdorferi cell was labeled. In Figure 4, immunogold labeling was utilized again to show that the tpp17 structural protein is much more present in the inner, periplasmic side of the outer plasma membrane of the B. burgdorferi cell. complete
CACAO 13555
on TREPA:TA17
Flagged
Public
Assessment
Ivanerill2019-03-24 16:13:14 CDT

See http://geneontology.org/docs/go-annotations/ for use of the "Contributes to" qualifier. Not applicable here.

Evidence is correct, but please update it to use the cross-linked evidence terms from ECO (i.e. those that end in "used in manual assertion" or "used in automatic assertion"). Most instances of evidence you will come across will be of type "used in manual assertion".

Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
Notes
Unique/Original
Public
Assessment
DanielRenfro2019-03-24 13:37:36 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
Contributes to GO:0005886 plasma membrane PMID:27161310 ECO:0005591 IDA: Inferred from Direct Assay C other:UniProtKB- P29722 In Figure 3, Immuno-SEM, specifically using immunogold labeling, was utilized to analyze the position of TP0435 (also known as gene tpp17) on the plasma membrane. There was not much gold/antibiotic tagging when the outside of the B. burgdorferi cell was labeled. In Figure 4, immunogold labeling was utilized again to show that the tpp17 structural protein is much more present in the inner, periplasmic side of the outer plasma membrane of the B. burgdorferi cell. complete
CACAO 13555
on TREPA:TA17
Flagged
Public
Assessment
Ivanerill2019-03-13 09:15:37 CDT

No notes!!! One assumes Fig. 1. The evidence can be further specified (IDA is root node). GO could possibly be refined.

Please use the cross-linked evidence terms from ECO (i.e. those that end in "used in manual assertion" or "used in automatic assertion" Most instances of evidence you will come across will be of type "used in manual assertion". Terms with "used in automatic assertion" imply that the authors did not make a conscious effort to analyze the results of an experiment, letting an algorithm make the call. For instance, if somebody were to use BLAST to determine that a bunch of proteins are homologous (and hence have the same function as the query) and they do not assess the BLAST results in any way (just accept whatever BLAST returns as significant given a preestablished threshold) that could be thought of as an "automatic assertion".

Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Private
Assessment
Ivanerill2019-03-09 16:16:10 CSTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Evidence
Notes
Unique/Original