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SGD:CHD1

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Species (Taxon ID) Saccharomyces cerevisiae (baker's yeast) (taxon:4932)
Gene Name(s) CHD1 ( synonyms: YER164W )
Protein Name(s) Chromatin remodeler that regulates various aspects of transcription,
External Links
SGD S000000966

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000124

SAGA complex

SGD_REF:S000080442
PMID:15647753[1]

IDA: Inferred from Direct Assay

C

From SGD

GO:0000166

nucleotide binding

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0547

F

From SGD

GO:0000182

rDNA binding

SGD_REF:S000120691
PMID:17259992[2]

IDA: Inferred from Direct Assay

F

From SGD

GO:0000790

nuclear chromatin

SGD_REF:S000072835
PMID:12504018[3]

IDA: Inferred from Direct Assay

C

From SGD

GO:0000790

nuclear chromatin

SGD_REF:S000073040
PMID:12682017[4]

IDA: Inferred from Direct Assay

C

From SGD

GO:0001178

regulation of transcriptional start site selection at RNA polymerase II promoter

SGD_REF:S000132405
PMID:19948887[5]

IGI: Inferred from Genetic Interaction

SGD:S000000449

P

From SGD

GO:0003676

nucleic acid binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

From SGD

GO:0003677

DNA binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR000330
InterPro:IPR009057

F

From SGD

GO:0003677

DNA binding

SGD_REF:S000145576
PMID:21623345[6]

IDA: Inferred from Direct Assay

F

From SGD

GO:0003677

DNA binding

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0238

F

From SGD

GO:0004386

helicase activity

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

From SGD

GO:0004386

helicase activity

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0347

F

From SGD

GO:0005524

ATP binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR001650
InterPro:IPR000330

F

From SGD

GO:0005524

ATP binding

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0067

F

From SGD

GO:0005634

nucleus

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR000953

C

From SGD

GO:0005634

nucleus

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0539

C

From SGD

GO:0005634

nucleus

SGD_REF:S000148671

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0191

C

From SGD

GO:0005739

mitochondrion

SGD_REF:S000075100
PMID:14576278[7]

IDA: Inferred from Direct Assay

C

From SGD

GO:0005739

mitochondrion

SGD_REF:S000117178
PMID:16823961[8]

IDA: Inferred from Direct Assay

C

From SGD

GO:0006351

transcription, DNA-dependent

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0804

P

From SGD

GO:0006355

regulation of transcription, DNA-dependent

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0805

P

From SGD

GO:0006363

termination of RNA polymerase I transcription

SGD_REF:S000120691
PMID:17259992[2]

IGI: Inferred from Genetic Interaction

SGD:S000005831
SGD:S000000449

P

From SGD

GO:0006368

transcription elongation from RNA polymerase II promoter

SGD_REF:S000073040
PMID:12682017[4]

IGI: Inferred from Genetic Interaction

SGD:S000004470

P

From SGD

GO:0006368

transcription elongation from RNA polymerase II promoter

SGD_REF:S000073040
PMID:12682017[4]

IPI: Inferred from Physical Interaction

SGD:S000003213
SGD:S000004470
SGD:S000004534

P

From SGD

GO:0006369

termination of RNA polymerase II transcription

SGD_REF:S000072835
PMID:12504018[3]

IGI: Inferred from Genetic Interaction

SGD:S000000449
SGD:S000005831

P

From SGD

GO:0006369

termination of RNA polymerase II transcription

SGD_REF:S000072835
PMID:12504018[3]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0008094

DNA-dependent ATPase activity

SGD_REF:S000039644
PMID:10811623[9]

IDA: Inferred from Direct Assay

F

From SGD

GO:0016568

chromatin modification

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0156

P

From SGD

GO:0016584

nucleosome positioning

SGD_REF:S000114409
PMID:16468993[10]

IGI: Inferred from Genetic Interaction

SGD:S000000449
SGD:S000005831

P

From SGD

GO:0016584

nucleosome positioning

SGD_REF:S000126647
PMID:17949749[11]

IDA: Inferred from Direct Assay

P

From SGD

GO:0016787

hydrolase activity

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0378

F

From SGD

GO:0030874

nucleolar chromatin

SGD_REF:S000120691
PMID:17259992[2]

IDA: Inferred from Direct Assay

C

From SGD

GO:0031490

chromatin DNA binding

SGD_REF:S000073040
PMID:12682017[4]

IDA: Inferred from Direct Assay

F

From SGD

GO:0034401

regulation of transcription by chromatin organization

SGD_REF:S000039644
PMID:10811623[9]

IGI: Inferred from Genetic Interaction

SGD:S000005816

P

From SGD

GO:0034401

regulation of transcription by chromatin organization

SGD_REF:S000114409
PMID:16468993[10]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0035064

methylated histone residue binding

SGD_REF:S000080442
PMID:15647753[1]

IDA: Inferred from Direct Assay

F

From SGD

GO:0042766

nucleosome mobilization

SGD_REF:S000114944
PMID:16606615[12]

IDA: Inferred from Direct Assay

P

From SGD

GO:0043044

ATP-dependent chromatin remodeling

SGD_REF:S000039644
PMID:10811623[9]

IDA: Inferred from Direct Assay

P

From SGD

GO:0046695

SLIK (SAGA-like) complex

SGD_REF:S000080442
PMID:15647753[1]

IDA: Inferred from Direct Assay

C

From SGD

GO:0071441

negative regulation of histone H3-K14 acetylation

SGD_REF:S000132405
PMID:19948887[5]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:2000104

negative regulation of DNA-dependent DNA replication

SGD_REF:S000125445
PMID:18245327[13]

IGI: Inferred from Genetic Interaction

SGD:S000004534
SGD:S000003175
SGD:S000003704
SGD:S000000264
SGD:S000006074
SGD:S000000340

P

From SGD

GO:2000616

negative regulation of histone H3-K9 acetylation

SGD_REF:S000132405
PMID:19948887[5]

IMP: Inferred from Mutant Phenotype

P

From SGD


Notes

References

See Help:References for how to manage references in GONUTS.
  1. 1.0 1.1 1.2 Pray-Grant, MG et al. (2005) Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature 433 434-8 PubMed GONUTS page
  2. 2.0 2.1 2.2 Jones, HS et al. (2007) RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA. Nat. Struct. Mol. Biol. 14 123-30 PubMed GONUTS page
  3. 3.0 3.1 3.2 Alén, C et al. (2002) A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Mol. Cell 10 1441-52 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 Simic, R et al. (2003) Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J. 22 1846-56 PubMed GONUTS page
  5. 5.0 5.1 5.2 Quan, TK & Hartzog, GA (2010) Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription. Genetics 184 321-34 PubMed GONUTS page
  6. Ryan, DP et al. (2011) The DNA-binding domain of the Chd1 chromatin-remodelling enzyme contains SANT and SLIDE domains. EMBO J. 30 2596-609 PubMed GONUTS page
  7. Sickmann, A et al. (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc. Natl. Acad. Sci. U.S.A. 100 13207-12 PubMed GONUTS page
  8. Reinders, J et al. (2006) Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. J. Proteome Res. 5 1543-54 PubMed GONUTS page
  9. 9.0 9.1 9.2 Tran, HG et al. (2000) The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. EMBO J. 19 2323-31 PubMed GONUTS page
  10. 10.0 10.1 Xella, B et al. (2006) The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization. Mol. Microbiol. 59 1531-41 PubMed GONUTS page
  11. Ferreira, H et al. (2007) Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms. J. Mol. Biol. 374 563-79 PubMed GONUTS page
  12. Stockdale, C et al. (2006) Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes. J. Biol. Chem. 281 16279-88 PubMed GONUTS page
  13. Biswas, D et al. (2008) A role for Chd1 and Set2 in negatively regulating DNA replication in Saccharomyces cerevisiae. Genetics 178 649-59 PubMed GONUTS page
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