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SGD:AIR1

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Species (Taxon ID) Saccharomyces cerevisiae (baker's yeast) (taxon:4932)
Gene Name(s) AIR1 ( synonyms: YIL079C )
Protein Name(s) Zinc knuckle protein,
External Links
SGD S000001341

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003676

nucleic acid binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR001878

F

From SGD

GO:0005634

nucleus

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0539

C

From SGD

GO:0005634

nucleus

SGD_REF:S000148671

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0191

C

From SGD

GO:0005730

nucleolus

SGD_REF:S000061434
PMID:11489916[1]

IDA: Inferred from Direct Assay

C

From SGD

GO:0005737

cytoplasm

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0963

C

From SGD

GO:0005737

cytoplasm

SGD_REF:S000148671

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0086

C

From SGD

GO:0008270

zinc ion binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR001878

F

From SGD

GO:0031499

TRAMP complex

SGD_REF:S000081438
PMID:15828860[2]

IDA: Inferred from Direct Assay

C

From SGD

GO:0031499

TRAMP complex

SGD_REF:S000081864
PMID:15935759[3]

IDA: Inferred from Direct Assay

C

From SGD

GO:0043629

ncRNA polyadenylation

SGD_REF:S000081438
PMID:15828860[2]

IDA: Inferred from Direct Assay

P

From SGD

GO:0046872

metal ion binding

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0479

F

From SGD

GO:0071031

nuclear mRNA surveillance of mRNA 3'-end processing

SGD_REF:S000122136
PMID:17410208[4]

IGI: Inferred from Genetic Interaction

SGD:S000004527
SGD:S000002334

P

From SGD

GO:0071035

nuclear polyadenylation-dependent rRNA catabolic process

SGD_REF:S000081843
PMID:15935758[5]

IGI: Inferred from Genetic Interaction

SGD:S000002334

P

From SGD

GO:0071035

nuclear polyadenylation-dependent rRNA catabolic process

SGD_REF:S000124708
PMID:18007593[6]

IGI: Inferred from Genetic Interaction

SGD:S000002334

P

From SGD

GO:0071036

nuclear polyadenylation-dependent snoRNA catabolic process

SGD_REF:S000081843
PMID:15935758[5]

IGI: Inferred from Genetic Interaction

SGD:S000002334

P

From SGD

GO:0071037

nuclear polyadenylation-dependent snRNA catabolic process

SGD_REF:S000081843
PMID:15935758[5]

IGI: Inferred from Genetic Interaction

SGD:S000002334

P

From SGD

GO:0071038

nuclear polyadenylation-dependent tRNA catabolic process

SGD_REF:S000081438
PMID:15828860[2]

IDA: Inferred from Direct Assay

P

From SGD

GO:0071038

nuclear polyadenylation-dependent tRNA catabolic process

SGD_REF:S000123616
PMID:17643380[7]

IDA: Inferred from Direct Assay

P

From SGD

GO:0071039

nuclear polyadenylation-dependent CUT catabolic process

SGD_REF:S000126896
PMID:18591258[8]

IGI: Inferred from Genetic Interaction

SGD:S000002334

P

From SGD

contributes_to

GO:0004652

polynucleotide adenylyltransferase activity

SGD_REF:S000081864
PMID:15935759[3]

IDA: Inferred from Direct Assay

F

From SGD

contributes_to

GO:0004652

polynucleotide adenylyltransferase activity

SGD_REF:S000081864
PMID:15935759[3]

IGI: Inferred from Genetic Interaction

SGD:S000002334

F

From SGD


Notes

References

See Help:References for how to manage references in GONUTS.
  1. Drees, BL et al. (2001) A protein interaction map for cell polarity development. J. Cell Biol. 154 549-71 PubMed GONUTS page
  2. 2.0 2.1 2.2 Vanácová, S et al. (2005) A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 3 e189 PubMed GONUTS page
  3. 3.0 3.1 3.2 Wyers, F et al. (2005) Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121 725-37 PubMed GONUTS page
  4. Rougemaille, M et al. (2007) Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J. 26 2317-26 PubMed GONUTS page
  5. 5.0 5.1 5.2 LaCava, J et al. (2005) RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121 713-24 PubMed GONUTS page
  6. Houseley, J et al. (2007) Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control. EMBO J. 26 4996-5006 PubMed GONUTS page
  7. Schneider, C et al. (2007) The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol. Cell 27 324-31 PubMed GONUTS page
  8. Milligan, L et al. (2008) A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Mol. Cell. Biol. 28 5446-57 PubMed GONUTS page
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