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SGD:ABF1

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Species (Taxon ID) Saccharomyces cerevisiae (baker's yeast) (taxon:4932)
Gene Name(s) ABF1 ( synonyms: YKL112W, BAF1, OBF1, REB2, SBF1 )
Protein Name(s) DNA binding protein with possible chromatin-reorganizing activity,
External Links
SGD S000001595

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0016584

nucleosome positioning

PMID:15456886[1]

IDA: Inferred from Direct Assay

P

Figure 1

complete
CACAO 3433

GO:0000113

nucleotide-excision repair factor 4 complex

SGD_REF:S000056193
PMID:10601031[2]

IDA: Inferred from Direct Assay

C

From SGD

GO:0000122

negative regulation of transcription from RNA polymerase II promoter

SGD_REF:S000076894
PMID:15192094[3]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0000978

RNA polymerase II core promoter proximal region sequence-specific DNA binding

SGD_REF:S000043563
PMID:7663308[4]

IDA: Inferred from Direct Assay

F

From SGD

GO:0001077

RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription

SGD_REF:S000043563
PMID:7663308[4]

IDA: Inferred from Direct Assay

F

From SGD

GO:0003677

DNA binding

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR006774

F

From SGD

GO:0003677

DNA binding

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0238

F

From SGD

GO:0003688

DNA replication origin binding

SGD_REF:S000042878
PMID:3281162[5]

IDA: Inferred from Direct Assay

F

From SGD

GO:0003688

DNA replication origin binding

SGD_REF:S000117043
PMID:16824194[6]

IDA: Inferred from Direct Assay

F

From SGD

GO:0005634

nucleus

SGD_REF:S000080227
PMID:15522095[7]

IDA: Inferred from Direct Assay

C

From SGD

GO:0005634

nucleus

SGD_REF:S000080227
PMID:15522095[7]

IMP: Inferred from Mutant Phenotype

C

From SGD

GO:0005634

nucleus

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR006774

C

From SGD

GO:0005634

nucleus

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0539

C

From SGD

GO:0005634

nucleus

SGD_REF:S000148671

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0191

C

From SGD

GO:0006260

DNA replication

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0235

P

From SGD

GO:0006261

DNA-dependent DNA replication

SGD_REF:S000069013
PMID:11756546[8]

IDA: Inferred from Direct Assay

P

From SGD

GO:0006281

DNA repair

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0234

P

From SGD

GO:0006338

chromatin remodeling

SGD_REF:S000040971
PMID:10684934[9]

IDA: Inferred from Direct Assay

P

From SGD

GO:0006338

chromatin remodeling

SGD_REF:S000040971
PMID:10684934[9]

IGI: Inferred from Genetic Interaction

SGD:S000005693

P

From SGD

GO:0006338

chromatin remodeling

SGD_REF:S000078500
PMID:11713306[10]

IDA: Inferred from Direct Assay

P

From SGD

GO:0006338

chromatin remodeling

SGD_REF:S000078500
PMID:11713306[10]

IGI: Inferred from Genetic Interaction

SGD:S000029652

P

From SGD

GO:0006338

chromatin remodeling

SGD_REF:S000124036

IEA: Inferred from Electronic Annotation

InterPro:IPR006774

P

From SGD

GO:0006351

transcription, DNA-dependent

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0804

P

From SGD

GO:0006355

regulation of transcription, DNA-dependent

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0805

P

From SGD

GO:0006974

response to DNA damage stimulus

SGD_REF:S000148669

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0227

P

From SGD

GO:0030466

chromatin silencing at silent mating-type cassette

SGD_REF:S000053123
PMID:8582634[11]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0030466

chromatin silencing at silent mating-type cassette

SGD_REF:S000117949
PMID:16908533[12]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0043565

sequence-specific DNA binding

SGD_REF:S000043563
PMID:7663308[4]

IDA: Inferred from Direct Assay

F

From SGD

GO:0043565

sequence-specific DNA binding

SGD_REF:S000050312
PMID:3275867[13]

IDA: Inferred from Direct Assay

F

From SGD

GO:0043565

sequence-specific DNA binding

SGD_REF:S000128778
PMID:19111667[14]

IDA: Inferred from Direct Assay

F

From SGD

GO:0044374

sequence-specific DNA binding, bending

SGD_REF:S000053200
PMID:8206955[15]

IDA: Inferred from Direct Assay

F

From SGD

GO:0045944

positive regulation of transcription from RNA polymerase II promoter

SGD_REF:S000076894
PMID:15192094[3]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0070911

global genome nucleotide-excision repair

SGD_REF:S000056193
PMID:10601031[2]

IMP: Inferred from Mutant Phenotype

P

From SGD

GO:0070911

global genome nucleotide-excision repair

SGD_REF:S000077426
PMID:15177043[16]

IDA: Inferred from Direct Assay

P

From SGD


Notes

References

See Help:References for how to manage references in GONUTS.
  1. Yarragudi, A et al. (2004) Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 24 9152-64 PubMed GONUTS page
  2. 2.0 2.1 Reed, SH et al. (1999) Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Genes Dev. 13 3052-8 PubMed GONUTS page
  3. 3.0 3.1 Miyake, T et al. (2004) Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. J. Biol. Chem. 279 34865-72 PubMed GONUTS page
  4. 4.0 4.1 4.2 Yoo, HY et al. (1995) Transcriptional control of the Saccharomyces cerevisiae ADH1 gene by autonomously replicating sequence binding factor 1. Curr. Microbiol. 31 163-8 PubMed GONUTS page
  5. Diffley, JF & Stillman, B (1988) Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer. Proc. Natl. Acad. Sci. U.S.A. 85 2120-4 PubMed GONUTS page
  6. Kawasaki, Y et al. (2006) Reconstitution of Saccharomyces cerevisiae prereplicative complex assembly in vitro. Genes Cells 11 745-56 PubMed GONUTS page
  7. 7.0 7.1 Loch, CM et al. (2004) Functional and physical interactions between autonomously replicating sequence-binding factor 1 and the nuclear transport machinery. Traffic 5 925-35 PubMed GONUTS page
  8. Miyake, T et al. (2002) Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing. Mol. Cell. Biol. 22 505-16 PubMed GONUTS page
  9. 9.0 9.1 Lascaris, RF et al. (2000) Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene. Nucleic Acids Res. 28 1390-6 PubMed GONUTS page
  10. 10.0 10.1 Bodmer-Glavas, M et al. (2001) RNA polymerase II and III transcription factors can stimulate DNA replication by modifying origin chromatin structures. Nucleic Acids Res. 29 4570-80 PubMed GONUTS page
  11. Loo, S et al. (1995) Roles of ABF1, NPL3, and YCL54 in silencing in Saccharomyces cerevisiae. Genetics 141 889-902 PubMed GONUTS page
  12. Zou, Y et al. (2006) Asymmetric positioning of nucleosomes and directional establishment of transcriptionally silent chromatin by Saccharomyces cerevisiae silencers. Mol. Cell. Biol. 26 7806-19 PubMed GONUTS page
  13. Buchman, AR et al. (1988) Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol. Cell. Biol. 8 210-25 PubMed GONUTS page
  14. Badis, G et al. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol. Cell 32 878-87 PubMed GONUTS page
  15. McBroom, LD & Sadowski, PD (1994) DNA bending by Saccharomyces cerevisiae ABF1 and its proteolytic fragments. J. Biol. Chem. 269 16461-8 PubMed GONUTS page
  16. Yu, S et al. (2004) The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair. DNA Repair (Amst.) 3 277-87 PubMed GONUTS page
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