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RAT:H33

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Species (Taxon ID) Rattus norvegicus (Rat). (10116)
Gene Name(s) H3f3b (synonyms: H3.3b)
Protein Name(s) Histone H3.3
External Links
UniProt P84245
EMBL X73683
BC063159
BC078759
BC086580
BC087725
PIR S34185
RefSeq NP_446437.1
XP_002728089.1
XP_003752732.1
UniGene Rn.106155
Rn.124815
Rn.198918
Rn.29857
ProteinModelPortal P84245
SMR P84245
BioGrid 250653
IntAct P84245
PaxDb P84245
PRIDE P84245
Ensembl ENSRNOT00000004329
ENSRNOT00000050223
GeneID 100361558
117056
KEGG rno:100361558
rno:117056
CTD 3021
RGD 621095
eggNOG COG2036
GeneTree ENSGT00760000118967
HOGENOM HOG000155290
HOVERGEN HBG001172
InParanoid P84245
KO K11253
OMA CHASMAR
OrthoDB EOG7HB5C2
PhylomeDB P84245
TreeFam TF314241
Reactome REACT_194748
REACT_196232
REACT_198737
REACT_199225
REACT_203770
REACT_212012
REACT_212909
REACT_218427
REACT_223113
REACT_226234
REACT_259307
REACT_269413
REACT_269872
NextBio 619898
Proteomes UP000002494
UP000002494
ExpressionAtlas P84245
Genevestigator P84245
GO GO:0000786
GO:0005634
GO:0003677
GO:0007420
GO:0009725
Gene3D 1.10.20.10
InterPro IPR009072
IPR007125
IPR000164
PANTHER PTHR11426
Pfam PF00125
PRINTS PR00622
SMART SM00428
SUPFAM SSF47113
PROSITE PS00322
PS00959

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0009725

response to hormone

PMID:8587656[1]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:7877725[2]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005575

cellular_component

GO_REF:0000015

ECO:0000307

no biological data found used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003674

molecular_function

GO_REF:0000015

ECO:0000307

no biological data found used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0031492

nucleosomal DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000152096
UniProtKB:Q6NXT2

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000152096
TAIR:locus:2035252
TAIR:locus:2035415
UniProtKB:P49450
UniProtKB:P59169
UniProtKB:P68431
UniProtKB:Q71DI3
WB:WBGene00001831
WB:WBGene00001946
WB:WBGene00010036
dictyBase:DDB_G0271092

C

Seeded From UniProt

complete

part_of

GO:0000786

nucleosome

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004828
PANTHER:PTN000152096
UniProtKB:P68431
UniProtKB:P84243
UniProtKB:Q16695
UniProtKB:Q6PI20
UniProtKB:Q71DI3
WB:WBGene00001946

C

Seeded From UniProt

complete

part_of

GO:0000786

nucleosome

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000164
InterPro:IPR007125

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000164
InterPro:IPR007125

F

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR009072

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0158
UniProtKB-SubCell:SL-0468

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0000786

nucleosome

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0544

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Scaturro, M et al. (1995) Posttranscriptional regulation of H1 zero and H3.3B histone genes in differentiating rat cortical neurons. Neurochem. Res. 20 969-76 PubMed GONUTS page
  2. Castiglia, D et al. (1994) H1(0) and H3.3B mRNA levels in developing rat brain. Neurochem. Res. 19 1531-7 PubMed GONUTS page
  3. 3.0 3.1 3.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page