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PMID:20836892

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Citation

Chen, P, Jäger, G and Zheng, B (2010) Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana. BMC Plant Biol. 10:201

Abstract

In all domains of life, transfer RNA (tRNA) molecules contain modified nucleosides. Modifications to tRNAs affect their coding capacity and influence codon-anticodon interactions. Nucleoside modification deficiencies have a diverse range of effects, from decreased virulence in bacteria, neural system disease in human, and gene expression and stress response changes in plants. The purpose of this study was to identify genes involved in tRNA modification in the model plant Arabidopsis thaliana, to understand the function of nucleoside modifications in plant growth and development.

Links

PubMed PMC2956550 Online version:10.1186/1471-2229-10-201

Keywords

Amino Acid Sequence; Arabidopsis/enzymology; Arabidopsis/genetics; Computational Biology; Gene Expression Regulation, Plant; Genes, Plant; Molecular Sequence Data; Mutagenesis, Insertional; Nucleic Acid Conformation; Phylogeny; Populus/enzymology; Populus/genetics; RNA, Plant/genetics; RNA, Plant/isolation & purification; RNA, Plant/metabolism; RNA, Transfer/genetics; RNA, Transfer/isolation & purification; RNA, Transfer/metabolism; Sequence Alignment

Significance

Annotations

Gene product Qualifier GO Term Evidence Code with/from Aspect Extension Notes Status

ARATH:Q93WD7

acts_upstream_of_or_within

GO:0008618: 7-methylguanosine metabolic process

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:Q93WD7

acts_upstream_of_or_within

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:Q9FGI9

acts_upstream_of_or_within

GO:0080179: 1-methylguanosine metabolic process

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:Q9FGI9

acts_upstream_of_or_within

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:ELP1

acts_upstream_of_or_within

GO:0080178: 5-carbamoylmethyl uridine residue modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:ELP1

acts_upstream_of_or_within

GO:0048530: fruit morphogenesis

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:ELP1

acts_upstream_of_or_within

GO:0009965: leaf morphogenesis

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:ELP1

acts_upstream_of_or_within

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:Q9LIN4

acts_upstream_of_or_within

GO:0080180: 2-methylguanosine metabolic process

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:Q9LIN4

acts_upstream_of_or_within

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:KTI12

acts_upstream_of_or_within

GO:0080178: 5-carbamoylmethyl uridine residue modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:KTI12

acts_upstream_of_or_within

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:KTI12

involved_in

GO:0006400: tRNA modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:KTI12

involved_in

GO:0080178: 5-carbamoylmethyl uridine residue modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

ARATH:KTI12

involved_in

GO:0002098: tRNA wobble uridine modification

ECO:0000315: mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete


See also

References

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