GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

MOUSE:SC22B

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Sec22b (synonyms: Sec22l1)
Protein Name(s) Vesicle-trafficking protein SEC22b

ER-Golgi SNARE of 24 kDa ERS-24 ERS24 SEC22 vesicle-trafficking protein homolog B SEC22 vesicle-trafficking protein-like 1 mSec22b

External Links
UniProt O08547
EMBL U91538
AK017237
AK034973
AK037918
AK088514
AK089928
BC009024
CCDS CCDS17658.1
RefSeq NP_035472.1
UniGene Mm.2551
Mm.486379
PDB 1IFQ
PDBsum 1IFQ
ProteinModelPortal O08547
SMR O08547
BioGrid 203149
DIP DIP-60852N
IntAct O08547
MINT MINT-1865345
PhosphoSite O08547
MaxQB O08547
PaxDb O08547
PRIDE O08547
Ensembl ENSMUST00000029476
GeneID 20333
KEGG mmu:20333
UCSC uc008qpk.1
CTD 9554
MGI MGI:1338759
eggNOG COG5143
GeneTree ENSGT00510000046833
HOGENOM HOG000044957
HOVERGEN HBG052748
InParanoid O08547
KO K08517
OMA LNRKSMY
OrthoDB EOG7GFB61
PhylomeDB O08547
TreeFam TF105933
EvolutionaryTrace O08547
NextBio 298135
PRO PR:O08547
Proteomes UP000000589
Bgee O08547
ExpressionAtlas O08547
Genevestigator O08547
GO GO:0005789
GO:0033116
GO:0000139
GO:0016021
GO:0042470
GO:0006888
GO:0015031
GO:0016192
Gene3D 3.30.450.50
InterPro IPR011012
IPR010908
IPR001388
Pfam PF13774
PF00957
PRINTS PR00219
SUPFAM SSF64356
PROSITE PS50859
PS50892

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0048280

vesicle fusion with Golgi apparatus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258

P

Seeded From UniProt

complete

part_of

GO:0031201

SNARE complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258

C

Seeded From UniProt

complete

part_of

GO:0012507

ER to Golgi transport vesicle membrane

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258
UniProtKB:O75396

C

Seeded From UniProt

complete

involved_in

GO:0006890

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258

P

Seeded From UniProt

complete

involved_in

GO:0006888

endoplasmic reticulum to Golgi vesicle-mediated transport

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258
UniProtKB:O97323

P

Seeded From UniProt

complete

part_of

GO:0005793

endoplasmic reticulum-Golgi intermediate compartment

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
UniProtKB:O75396

C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1338759
PANTHER:PTN001465421

C

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258
TAIR:locus:2008960

C

Seeded From UniProt

complete

enables

GO:0005484

SNAP receptor activity

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001465421
SGD:S000004258

F

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1338759
PANTHER:PTN001465421

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1902902

negative regulation of autophagosome assembly

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75396

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045732

positive regulation of protein catabolic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75396

P

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:1309988

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016192

vesicle-mediated transport

PMID:9094723[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0012507

ER to Golgi transport vesicle membrane

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75396

C

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:1309988

C

Seeded From UniProt

complete

part_of

GO:0005793

endoplasmic reticulum-Golgi intermediate compartment

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75396

C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

PMID:9094723[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

PMID:9094723[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

PMID:11042173[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1902902

negative regulation of autophagosome assembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75396
ensembl:ENSP00000463393

P

Seeded From UniProt

complete

involved_in

GO:0045732

positive regulation of protein catabolic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75396
ensembl:ENSP00000463393

P

Seeded From UniProt

complete

part_of

GO:0012507

ER to Golgi transport vesicle membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75396
ensembl:ENSP00000463393

C

Seeded From UniProt

complete

part_of

GO:0005793

endoplasmic reticulum-Golgi intermediate compartment

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75396
ensembl:ENSP00000463393

C

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q4KM74
ensembl:ENSRNOP00000025327

F

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q4KM74
ensembl:ENSRNOP00000025327

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001388

C

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001388

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006888

endoplasmic reticulum to Golgi vesicle-mediated transport

PMID:12361953[4]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0256

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0931

P

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0653

P

Seeded From UniProt

complete

part_of

GO:0005794

Golgi apparatus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0333
UniProtKB-SubCell:SL-0132

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

part_of

GO:0033116

endoplasmic reticulum-Golgi intermediate compartment membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0099

C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0097

C

Seeded From UniProt

complete

part_of

GO:0042470

melanosome

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0161

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  2. 2.0 2.1 2.2 Hay, JC et al. (1997) Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Cell 89 149-58 PubMed GONUTS page
  3. Bell, AW et al. (2001) Proteomics characterization of abundant Golgi membrane proteins. J. Biol. Chem. 276 5152-65 PubMed GONUTS page
  4. Jang, SB et al. (2002) Crystal structure of SEDL and its implications for a genetic disease spondyloepiphyseal dysplasia tarda. J. Biol. Chem. 277 49863-9 PubMed GONUTS page