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ECOLI:RPOZ
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rpoZ | |
| Protein Name(s) | DNA-directed RNA polymerase subunit omega
RNAP omega subunit RNA polymerase omega subunit Transcriptase subunit omega | |
| External Links | ||
| UniProt | P0A800 | |
| EMBL | M24503 M15266 L10328 U00096 AP009048 | |
| PIR | A29038 | |
| RefSeq | NP_418106.1 YP_491785.1 | |
| PDB | 3IYD 3LU0 4IGC 4JK1 4JK2 4KMU 4KN4 4KN7 4MEX 4MEY | |
| PDBsum | 3IYD 3LU0 4IGC 4JK1 4JK2 4KMU 4KN4 4KN7 4MEX 4MEY | |
| ProteinModelPortal | P0A800 | |
| SMR | P0A800 | |
| DIP | DIP-31837N | |
| IntAct | P0A800 | |
| MINT | MINT-1222720 | |
| STRING | 511145.b3649 | |
| ChEMBL | CHEMBL2364672 | |
| PaxDb | P0A800 | |
| PRIDE | P0A800 | |
| EnsemblBacteria | AAC76673 BAE77644 | |
| GeneID | 12930353 948160 | |
| KEGG | ecj:Y75_p3525 eco:b3649 | |
| PATRIC | 32122785 | |
| EchoBASE | EB0892 | |
| EcoGene | EG10899 | |
| eggNOG | COG1758 | |
| HOGENOM | HOG000245721 | |
| InParanoid | P0A800 | |
| KO | K03060 | |
| OMA | DEMNDKP | |
| OrthoDB | EOG6Q5NV5 | |
| PhylomeDB | P0A800 | |
| BioCyc | EcoCyc:EG10899-MONOMER ECOL316407:JW3624-MONOMER | |
| EvolutionaryTrace | P0A800 | |
| PRO | PR:P0A800 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A800 | |
| GO | GO:0030880 GO:0003677 GO:0003899 GO:0006461 GO:0006351 | |
| Gene3D | 3.90.940.10 | |
| HAMAP | MF_00366 | |
| InterPro | IPR003716 IPR006110 IPR012293 | |
| Pfam | PF01192 | |
| SUPFAM | SSF63562 | |
| TIGRFAMs | TIGR00690 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0030880 |
RNA polymerase complex |
ECO:0000315 |
C |
Figure 5 |
complete | |||||
|
part_of |
GO:0030880 |
RNA polymerase complex |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0065003 |
protein-containing complex assembly |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003899 |
DNA-directed 5'-3' RNA polymerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR003716 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR003716 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003899 |
DNA-directed 5'-3' RNA polymerase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003899 |
DNA-directed 5'-3' RNA polymerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000036419 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000036419 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000036419 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016779 |
nucleotidyltransferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003899 |
DNA-directed 5'-3' RNA polymerase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gentry, DR & Burgess, RR (1990) Overproduction and purification of the omega subunit of Escherichia coli RNA polymerase. Protein Expr. Purif. 1 81-6 PubMed GONUTS page
- ↑ Ghosh, P et al. (2001) Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly. Eur. J. Biochem. 268 4621-7 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
