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ECOLI:NSRR
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | nsrR (synonyms: yjeB) | |
| Protein Name(s) | HTH-type transcriptional repressor NsrR | |
| External Links | ||
| UniProt | P0AF63 | |
| EMBL | J04199 U14003 U00096 AP009048 | |
| PIR | S56403 | |
| RefSeq | NP_418599.1 YP_492320.1 | |
| ProteinModelPortal | P0AF63 | |
| SMR | P0AF63 | |
| DIP | DIP-48211N | |
| IntAct | P0AF63 | |
| STRING | 511145.b4178 | |
| PaxDb | P0AF63 | |
| PRIDE | P0AF63 | |
| DNASU | 948693 | |
| EnsemblBacteria | AAC77135 BAE78179 | |
| GeneID | 12933032 948693 | |
| KEGG | ecj:Y75_p4064 eco:b4178 | |
| PATRIC | 32123929 | |
| EchoBASE | EB1197 | |
| EcoGene | EG11212 | |
| eggNOG | COG1959 | |
| HOGENOM | HOG000249814 | |
| InParanoid | P0AF63 | |
| KO | K13771 | |
| OMA | QQAVQNF | |
| OrthoDB | EOG6BGP3D | |
| PhylomeDB | P0AF63 | |
| BioCyc | EcoCyc:EG11212-MONOMER ECOL316407:JW4136-MONOMER | |
| PRO | PR:P0AF63 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AF63 | |
| GO | GO:0032993 GO:0051537 GO:0003677 GO:0003690 GO:0005506 GO:0051536 GO:0003700 GO:0045892 GO:0006355 GO:0006351 | |
| Gene3D | 1.10.10.10 | |
| HAMAP | MF_01177 | |
| InterPro | IPR000944 IPR023761 IPR011991 | |
| Pfam | PF02082 | |
| TIGRFAMs | TIGR00738 | |
| PROSITE | PS01332 PS51197 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11212 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG13397 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG13397 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
| GO:0005737 |
cytoplasm |
ECO:0000314 |
C |
Fig 2: NsrR binds to sites in the promoter regions of the fliAZY, fliLMNOPQR and mqsR-ygiT transcription units, which encode proteins involved in motility and biofilm development. |
complete | |||||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000100856 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000100856 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005506 |
iron ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000100856 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000100856 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0051536 |
iron-sulfur cluster binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Bodenmiller, DM & Spiro, S (2006) The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator. J. Bacteriol. 188 874-81 PubMed GONUTS page
- ↑ Partridge, JD et al. (2009) NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility. Mol. Microbiol. 73 680-94 PubMed GONUTS page
