GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:ARCA
Contents
Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
Gene Name(s) | arcA (synonyms: cpxC, dye, fexA, msp, seg, sfrA) | |
Protein Name(s) | Aerobic respiration control protein ArcA
Dye resistance protein | |
External Links | ||
UniProt | P0A9Q1 | |
EMBL | M10044 U14003 U00096 AP009048 L34010 | |
PIR | A03561 | |
RefSeq | NP_418818.1 YP_492531.1 | |
PDB | 1XHE 1XHF | |
PDBsum | 1XHE 1XHF | |
ProteinModelPortal | P0A9Q1 | |
SMR | P0A9Q1 | |
DIP | DIP-36035N | |
IntAct | P0A9Q1 | |
STRING | 511145.b4401 | |
SWISS-2DPAGE | P0A9Q1 | |
PaxDb | P0A9Q1 | |
PRIDE | P0A9Q1 | |
EnsemblBacteria | AAC77354 BAE78390 | |
GeneID | 12930392 948874 | |
KEGG | ecj:Y75_p4285 eco:b4401 | |
PATRIC | 32124420 | |
EchoBASE | EB0059 | |
EcoGene | EG10061 | |
eggNOG | COG0745 | |
HOGENOM | HOG000034819 | |
InParanoid | P0A9Q1 | |
KO | K07773 | |
OMA | FLECEGF | |
OrthoDB | EOG6G4VQG | |
PhylomeDB | P0A9Q1 | |
BioCyc | EcoCyc:ARCA-MONOMER ECOL316407:JW4364-MONOMER | |
EvolutionaryTrace | P0A9Q1 | |
PRO | PR:P0A9Q1 | |
Proteomes | UP000000318 UP000000625 | |
Genevestigator | P0A9Q1 | |
GO | GO:0005737 GO:0003677 GO:0042802 GO:0000156 GO:0003700 GO:0045892 GO:0000160 GO:0045893 GO:0006355 GO:0006351 | |
Gene3D | 1.10.10.10 | |
InterPro | IPR011006 IPR001867 IPR016032 IPR001789 IPR011991 | |
Pfam | PF00072 PF00486 | |
SMART | SM00448 SM00862 | |
SUPFAM | SSF46894 SSF52172 | |
PROSITE | PS50110 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.3 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.3 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.3 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10020 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10020 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000156 |
phosphorelay response regulator activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10061 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000156 |
phosphorelay response regulator activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Park, DM et al. (2013) The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally. PLoS Genet. 9 e1003839 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Gao, R et al. (2008) System-level mapping of Escherichia coli response regulator dimerization with FRET hybrids. Mol. Microbiol. 69 1358-72 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Iuchi, S & Lin, EC (1988) arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. U.S.A. 85 1888-92 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 Liu, X & De Wulf, P (2004) Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. J. Biol. Chem. 279 12588-97 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Drury, LS & Buxton, RS (1985) DNA sequence analysis of the dye gene of Escherichia coli reveals amino acid homology between the dye and OmpR proteins. J. Biol. Chem. 260 4236-42 PubMed GONUTS page
- ↑ Cho, BK et al. (2006) Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA. Microbiology (Reading, Engl.) 152 2207-19 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ 9.0 9.1 Iuchi, S & Lin, EC (1992) Purification and phosphorylation of the Arc regulatory components of Escherichia coli. J. Bacteriol. 174 5617-23 PubMed GONUTS page
b
d
p